1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagtgccatttctttccttcaaagttagaaacttgattcatgtggtggtgagagagagatatatttatggtgttttaatgtatgcagGCTAATAATCTTGTGATTAAACTGTGGGGTGAAAAGCGGTTTTCTACGCCTGGTCTGAAGCTGAAAAACCATGTGGATCTTGTTGAGCTTCTCGGTATTG
species | Arabidopsis thaliana |
transcript | AT5G27470.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCAAGTTGGTAATTTGGTCCATGATTCTGTTCCAGNTGATAAGGACGAG GCTAATAATCTTGTGATTAAACTGTGGGGTGAAAAGCGGTTTTCTACGCCTEST: gi|125303450|gb|EL317535.1|EL317535
genomic: AGCAAGTTGGTAATTTGGTCCATGATTCTGTTCCAGTTGATAAGGACGAGgttagtgcca ... atgtatgcagGCTAATAATCTTGTGATTAAACTGTGGGGTGAAAAGCGGTTTTCTACGCCT
EST: CAGTTGTTAAGGACGAG GCTAATAATCTTGTGATTAAACTGTGGGGTGAAAAGCGGTTTTCTACGCCTEST: gi|86070372|gb|DR366129.1|DR366129
genomic: CAGTTGATAAGGACGAGgttagtgcca ... atgtatgcagGCTAATAATCTTGTGATTAAACTGTGGGGTGAAAAGCGGTTTTCTACGCCT
EST: AGCAAGTTGGTAATTTGGTCCATGATTCTGTTCCAGTTGATAAGGACGAG GCTAATAATCTEST: gi|86070373|gb|DR366130.1|DR366130
genomic: AGCAAGTTGGTAATTTGGTCCATGATTCTGTTCCAGTTGATAAGGACGAGgttagtgcca ... atgtatgcagGCTAATAATCT
EST: GCAAGTTGGGTAATTTGGTCCATGATTCTGTTCCAGTTGATAAGGACGAG GCTAATAATCTTGTGATTAAACTGTGG
genomic: GCAAGTTGG-TAATTTGGTCCATGATTCTGTTCCAGTTGATAAGGACGAGgttagtgcca ... atgtatgcagGCTAATAATCTTGTGATTAAACTGTGG
ttgattcatgtggtggtgagagagagatatatttatggtgttttaatgtatgcagGCTAATAATCTTGTGATTAAACTGTGGGGTGAAAAGCGGTTTTCTACGCCTGGTCTGAAGCTGAAAAACCATGTGGATCTTGTTGAGCTTCTCGGTATTG
ttttaat putative branch site (score: 3)
atatatttatggtgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgccatttctttccttcaaagttagaaacttgattcatgtggtggtgagagagagatatatttatggtgttttaatgtatgcagGCTAATAATCTTGTGATTAAACTGTGGGGTGAAAAGCGGTTTTCTACGCCTGGTCTGAAGCTGAAAAACCATGTGGATCTTGTTGAGCTTCTCGGTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT