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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaacaaaatttagtgagaatgatcaaattcacatatatagaagctttgatttattgatttgggggatgatgttacgagttttttcagGGATTTGAACTTATACCGTCAGAGAATTTCACTTCTCTATCTGTGATGCAAGCCGTTGGTTCTGTTATGACTAATAAGTATAGTGAAGGATACCCTGGAG

Basic information

species Arabidopsis thaliana
transcript AT5G26780.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G26780.3 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA02G38160.2 (Glycine max), 3'ss of exon 3
------------------gtatcaacaaaatttagtgagaatgatcaaattcacatata------tagaagctttg---atttattgatt-tgggggatgatgttacg-agttttttcagGGATTTGAACTTATACCGTCAGAGAATTTCACTTCTCTATCTGTGATGCAAGCCGTTGGTTCTGTTATGACTAATAAGTATAGTGAAGGATACCCTGGAG
                  |||  |      |||  |  ||| | |   ||| | | |||        ||   | ||   | || ||| || |||  | | || ||     |  |    |||| || ||||||||||| || ||||||||||| || || || ||||||||||||||||| || || ||||| ||||| || || |||||||| || || |
gtgaatccaagtttcattgtagtagagtgctttgctttgaa-gtttggattgataaatagcgtttccgattttatgcataattgttgtttatggaagtttattttgtacggaatgcgtagGGGTTCGAACTTATACCTTCGGAGAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACGAATAAATACAGCGAAGGATATCCCGGTG

upper sequence: AT5G26780.3 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA14G36280.2 (Glycine max), 3'ss of exon 3
--------------------gtatcaacaaaatttagtgagaatgatcaaattcacatatatagaagctttgatttattg--atttggggga---tgatgttacgagttttttcagGGATTTGAACTTATACCGTCAGAGAATTTCACTTCTCTATCTGTGATGCAAGCCGTTGGTTCTGTTATGACTAATAAGTATAGTGAAGGATACCCTGGAG
                      |         |||  |  |||| |  ||||  |    |   ||   | ||  | ||||   |||  || |   || |  ||||   ||| | |||| || ||||||||||| || || |||||||| || || || ||||||||||| ||||| || || ||||| ||||| || ||||||||||| ||||| |
gtgaatccgagtttcattctacagtgctttgctttgctttgaattaataaat--aagctttccgattttatgcatgattgttgtttacggaagtttgtttgtacggaatttgt-agGGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAAGCAGTTGGATCGGTGATGACGAATAAATACAGTGAAGGATATCCTGGTG

upper sequence: AT5G26780.3 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 3'ss of exon 3
-gtatcaa---caaaatttagtgagaatgatcaaattcacatatatagaagctttgatttattgatttgggggatgatgtta---cgagtttttt----cagGGATTTGAACTTATACCGTCAGAGAATTTCACTTCTCTATCTGTGATGCAAGCCGTTGGTTCTGTTATGACTAATAAGTATAGTGAAGGATACCCTGGAG
 || |  |   || |||||  || | || | ||  | || |    |     |||||||||      ||     | ||| ||     || ||||||     ||||||| ||||| || || ||||| |||||||| ||  ||||||| |||||||||||||| || || ||||||||||| ||||||||||| || ||||| |
tgttttgagttcagaattttttg-ggatcaccatttgcagaggactgtggactttgatttga-agcttacattacgattttgaattgaattttttgatgtagGGATTGGAACTCATTCCTTCAGAAAATTTCACATCGGTATCTGTAATGCAAGCCGTTGGATCAGTCATGACTAATAAATATAGTGAAGGGTATCCTGGTG

upper sequence: AT5G26780.3 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S51_296V6.1 (Physcomitrella patens), 3'ss of exon 2
-----------------gtatcaacaaaattta-gtgagaatgatcaaattcacatatatagaagctttgatttatt--gatttgggggatgatgt-----------tacgagtt----ttttcagGGATTTGAACTTATACCGTCAGAGAATTTCACTTCTCTATCTGTGATGCAAGCCGTTGGTTCTGTTATGACTAATAAGTATAGTGAAGGATACCCTGGAG
                 || || |  |  |||| || ||||| ||||| |     |  ||    || |||  || ||  |   | |  |||| |||             || ||     ||  |||||  | ||  | || || |||||||||||||| ||| | || || ||||| || || ||||| || ||||| |||||||| ||||||||||| |||||  
gtatgatttctagcactgtttccattatgtttatgtcagaat-atcaagtggtgtttgatgcttgcattgccttttttagggcttgacgatgttgtatcttcctccactcgtgtcacgattgacagGGCCTCGAGTTGATCCCATCAGAGAATTTCACGTCTGTTTCAGTTATGCAGGCAGTAGGTTCCGTCATGACCAATAAGTACAGTGAAGGATATCCTGGT-

upper sequence: AT5G26780.3 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S79_54V6.1 (Physcomitrella patens), 3'ss of exon 3
------------------------------------------------------------gtatcaac-----aaaatttagtgagaatgatcaaattcacatatatagaagctttgatttatt--gatttgggggatgatgtta---cgagtt----ttttcagGGATTTGAACTTATACCGTCAGAGAATTTCACTTCTCTATCTGTGATGCAAGCCGTTGGTTCTGTTATGACTAATAAGTATAGTGAAGGATACCCTGGAG
                                                            ||||  |      |  ||  ||||| | |     | |    ||  |||   |  |  | ||||   |   |||| ||| ||  ||    | |||    ||| |||||| |||| || || |||||||||||||| || ||  |||| || ||||| || || ||||| || ||||| |||||||| |||||||| ||||| || |
gtatgaacatccgctcctgtgtttttgtaacccctctttatttgagctaaaatttgtcttgtatttatgttggagtatcaagtgacagttgatgagtaatgattgatatttgaatgaacttatctagggctgggtgataattctaagttgcgttgcgctttccagGGACTTGAGCTGATCCCGTCAGAGAATTTTACGTCCGTATCAGTTATGCAGGCAGTGGGTTCAGTCATGACCAATAAGTACAGTGAAGGTTACCCCGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatagaagctttgatttattgatttgggggatgatgttacgagttttttcagGGATTTGAACTTATACCGTCAGAGAATTTCACTTCTCTATCTGTGATGCAAGCCGTTGGTTCTGTTATGACTAATAAGTATAGTGAAGGATACCCTGGAG
                   tattgat  putative branch site (score: 3)
                                              ttttttc  putative PPT
            tttgatttattgattt  TA-rich tract