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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctatcttaagttgatatgtattgctcttgttcttcagtcacatctatatgattggtttggtgattcttaggtttcttgaaagcattcattgttgggttaagtatcaacagaaaagttgattttgtatttaatttcatacagGTTCTATCTAAAGAAGGCGTAGAGACCTTAGCCTTGTGCAAGAAAATGATGGACCTCGGTGAATGCCCGCCACTTATGGTCGTCTTCGATCCTTATGAAG

Basic information

species Arabidopsis thaliana
transcript AT5G24330.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084245|gb|DR380004.1|DR380004
EST:     AGGCTCCAAGATCTGCAAACCAAGCTGCTTTTGAGAAAGGAGGCATGCAG                         GTTCTATCTAAAGAAGGCGTAGAGACCTTAGCCTTGTGCAAGAAAATGATG
genomic: AGGCTCCAAGATCTGCAAACCAAGCTGCTTTTGAGAAAGGAGGCATGCAGgtatctatct ... tttcatacagGTTCTATCTAAAGAAGGCGTAGAGACCTTAGCCTTGTGCAAGAAAATGATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgttgggttaagtatcaacagaaaagttgattttgtatttaatttcatacagGTTCTATCTAAAGAAGGCGTAGAGACCTTAGCCTTGTGCAAGAAAATGATGGACCTCGGTGAATGCCCGCCACTTATGGTCGTCTTCGATCCTTATGAAG
                                       atttaat  putative branch site (score: 4)
                        aaaagttgattttgta  TA-rich tract