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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaacactttctctgactttttgtcaagtacttggtttgttgattatgattttggaatcttatgagtatatcagaacaaaggtttctaaattaggatattagtcttcatgtcagttgatacaagtattatccagtgcagGAGAGAGGAATACTGATCCTAAAAGTCCACCAAGTAGGCAGAGTTCAGAGATTAGTTTGTGGGAAAGGCTTGGTAAAGCTTCTACTGTGGATATTGATTC

Basic information

species Arabidopsis thaliana
transcript AT5G23720.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G23720.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA04G37730.1 (Glycine max), 3'ss of exon 3
gttaacactttctctgactttttgtcaagtacttggtttgttgattatgattttggaatcttatgagtatatcagaaca--aaggtttctaaattaggatattagtcttcatgtcagttgatacaagtattatccagtgcagGAGAGAGGAATACTGATCCTAAAAGTCCACCAAGTAGGCAGAGTTCAGAGATTAGTTTGTGGGAAAGGCTTGGTAAAGCTTCTACTGTGGATATTGATTC----
                          | |    ||||     |  |||| |   ||| | |  |   | ||| |    |  | | ||||| || | || | |||            | ||||  || | || | |||  | |||||    | |   ||  | || | |        |  ||| |   ||||||||||||||||||| |||||||||||||||   |   |||| ||||| ||    
--------------------------aggggagtggtaaacggggtatgttggaggagtttcctttttttatgaatttagtatgctttctgaagt-ggttgttaa----------ggatgatttaatttttgttcagCCCGGGAGAATCTATTGAGGACACGAAGAAT------GATCAGCAAA---CAGAGATTAGTTTGTGGGAGAGGCTTGGTAAAGCTGAAATGTTGGACATTGAGTCGAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaaattaggatattagtcttcatgtcagttgatacaagtattatccagtgcagGAGAGAGGAATACTGATCCTAAAAGTCCACCAAGTAGGCAGAGTTCAGAGATTAGTTTGTGGGAAAGGCTTGGTAAAGCTTCTACTGTGGATATTGATTC
                                     aagtattat  TA-rich tract