1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgtaacatatgcacatcttatttccaaaacttatatatgaaccttggtttttaattctggttttcggtttcagGCATGGTTTAGAGAACTGCCGACAAGCGTTCTTGATTCGTTGTCGCCTGAACAGGTGATGCAGTGCCAAACAGAAGAGGAAAATGTTGAGCTCGTTAGGC
species | Arabidopsis thaliana |
transcript | AT5G22400.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATTTATACCTGAGCGAATCGATGTTCACTGTTTGGCAGGGCTTATCAAG GCATGGTTTAGAGAACTGCCGACAAGCGTTCTTGATTCGTTGTCGCCTGAAEST: gi|164215807|gb|ES024466.1|ES024466
genomic: GATTTATACCTGAGCGAATCGATGTTCACTGTTTGGCAGGGCTTATCAAGgtatgtaaca ... tcggtttcagGCATGGTTTAGAGAACTGCCGACAAGCGTTCTTGATTCGTTGTCGCCTGAA
EST: TGTTCACTGTTTGGCAGGGCTTATCAAG GCATGGTTTAGAGAACTGCCGACAAGCGTTCTTGATTCGTTGTCGCCTGAAEST: gi|125224523|gb|EL238608.1|EL238608
genomic: TGTTCACTGTTTGGCAGGGCTTATCAAGgtatgtaaca ... tcggtttcagGCATGGTTTAGAGAACTGCCGACAAGCGTTCTTGATTCGTTGTCGCCTGAA
EST: GATTTATACCTGAGCGAATCGATGTTCACTGTTTGGCAGGGCTTATCAAG GCATGGTTTAGAGAACTGCCGACAAGCGTTCTTGATTCGTTG
genomic: GATTTATACCTGAGCGAATCGATGTTCACTGTTTGGCAGGGCTTATCAAGgtatgtaaca ... tcggtttcagGCATGGTTTAGAGAACTGCCGACAAGCGTTCTTGATTCGTTG
tatttccaaaacttatatatgaaccttggtttttaattctggttttcggtttcagGCATGGTTTAGAGAACTGCCGACAAGCGTTCTTGATTCGTTGTCGCCTGAACAGGTGATGCAGTGCCAAACAGAAGAGGAAAATGTTGAGCTCGTTAGGC
ttttaat putative branch site (score: 3)
ttttc putative PPT
aaaacttatatatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaacatatgcacatcttatttccaaaacttatatatgaaccttggtttttaattctggttttcggtttcagGCATGGTTTAGAGAACTGCCGACAAGCGTTCTTGATTCGTTGTCGCCTGAACAGGTGATGCAGTGCCAAACAGAAGAGGAAAATGTTGAGCTCGTTAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA