1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctctgcttaaagaaatttcattattgttttgttttgatgcttgagttccagatcacttttattaatcaacaaaactgcttttcttgtttgtgttcggcagGGTCTTGTTGACATGCTTGATAGTTTTCTTGCTGTACATAATAATCGCATCTTTCTGCGGAGGAATCACTTTACCATCATGCAGATCTTAAAATCTGGCG
species | Arabidopsis thaliana |
transcript | AT5G22360.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATCTAAGCGCCTTCGCCGAGCTCTTTGGATGAAAA-TGCTAAGCTCCT GGTCTTGTTGACAEST: gi|19874718|gb|AU235549.1|AU235549
genomic: CAATCTAAGCGCCTTCGCCGAGCTCTTTGGATGAAAAATGCTAAGCTCCTgtaaggatct ... tgttcggcagGGTCTTGTTGACA
EST: CAATCTAAGCGCCTTCGCCGAGCTCTTTGGATGAAAAATGCTAAGCTCCT GGTCTTGTTGACATGCTTGATAGTTTTCTTGCTGTACATAATAATCGCATCEST: gi|125034697|gb|EL106966.1|EL106966
genomic: CAATCTAAGCGCCTTCGCCGAGCTCTTTGGATGAAAAATGCTAAGCTCCTgtaaggatct ... tgttcggcagGGTCTTGTTGACATGCTTGATAGTTTTCTTGCTGTACATAATAATCGCATC
EST: CAATCTAAGCGCCTTCGCCGAGCTCTTTGGATGAAAAATGCTAAGCTCCT GGTCTTGTTGACAEST: gi|125026679|gb|EL098948.1|EL098948
genomic: CAATCTAAGCGCCTTCGCCGAGCTCTTTGGATGAAAAATGCTAAGCTCCTgtaaggatct ... tgttcggcagGGTCTTGTTGACA
EST: CAATCTAAGCGCCTTCGCCGAGCTCTTTGGATGAAAAATGCTAAGCTCCT GGTCTTGTTGACATGCTTGATAGTTTTCTTGCTGTACATAEST: gi|124708846|gb|EH800248.1|EH800248
genomic: CAATCTAAGCGCCTTCGCCGAGCTCTTTGGATGAAAAATGCTAAGCTCCTgtaaggatct ... tgttcggcagGGTCTTGTTGACATGCTTGATAGTTTTCTTGCTGTACATA
EST: CAATCTAAGCGCCTTCGCCGAGCTCTTTGGATGAAAAATGCTAAGCTCCT GGTCTTGTTGACATGCTTGATAGTTTTCTTGCTGTACATAATAA
genomic: CAATCTAAGCGCCTTCGCCGAGCTCTTTGGATGAAAAATGCTAAGCTCCTgtaaggatct ... tgttcggcagGGTCTTGTTGACATGCTTGATAGTTTTCTTGCTGTACATAATAA
ttccagatcacttttattaatcaacaaaactgcttttcttgtttgtgttcggcagGGTCTTGTTGACATGCTTGATAGTTTTCTTGCTGTACATAATAATCGCATCTTTCTGCGGAGGAATCACTTTACCATCATGCAGATCTTAAAATCTGGCG
tattaat putative branch site (score: 2)
cttttcttgtttgt putative PPT
ttttattaatcaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctgcttaaagaaatttcattattgttttgttttgatgcttgagttccagatcacttttattaatcaacaaaactgcttttcttgtttgtgttcggcagGGTCTTGTTGACATGCTTGATAGTTTTCTTGCTGTACATAATAATCGCATCTTTCTGCGGAGGAATCACTTTACCATCATGCAGATCTTAAAATCTGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - aaagaaa
- - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - -ccagatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa