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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctaccctaaacccattattacattaggtttgtttatgccccatgtttatgatgaattggttggtccttacagGTCATTGTCAAGAGAAGACGACGTTTTCCTTGAAGAGTTTTCATCCGTTGACTCAGATTCTAGTGTGAACATTAGTAACAGGTTCAGTACAGACAGTTCG

Basic information

species Arabidopsis thaliana
transcript AT5G20310.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116480538|gb|EG523130.1|EG523130
EST:     ACTGCACCTTTGTCACCACGCAGCAACGGCGATGAGGCTCCCTCTGAGAT                         GTCATTGTCAAGAGAAGACGACGTTTTCCTTGAAGAGTTTTCATCCGTTGA
genomic: ACTGCACCTTTGTCACCACGCAGCAACGGCGATGAGGCTCCCTCTGAGATgtaatctacc ... gtccttacagGTCATTGTCAAGAGAAGACGACGTTTTCCTTGAAGAGTTTTCATCCGTTGA
EST: gi|116480536|gb|EG523128.1|EG523128
EST:     ACTGCACCTTTGTCACCACGCAGCAACGGCGATGAGGCTCCCTCTGAGAT                         GTCATTGTCAAGAGAAGACGACGTTTTCCTTGAAGAGTTTTCATCCGTTGA
genomic: ACTGCACCTTTGTCACCACGCAGCAACGGCGATGAGGCTCCCTCTGAGATgtaatctacc ... gtccttacagGTCATTGTCAAGAGAAGACGACGTTTTCCTTGAAGAGTTTTCATCCGTTGA
EST: gi|116481362|gb|EG523954.1|EG523954
EST:     ACTGCACCTTTGTCACCACGCAGCAACGGCGATGAGGCTCCCTCTGAGAT                         GTCATTGTCAAGAGAAGACGACGTTTTCCTTGAAGAGTTTTCATCCGTTGA
genomic: ACTGCACCTTTGTCACCACGCAGCAACGGCGATGAGGCTCCCTCTGAGATgtaatctacc ... gtccttacagGTCATTGTCAAGAGAAGACGACGTTTTCCTTGAAGAGTTTTCATCCGTTGA
EST: gi|116481369|gb|EG523961.1|EG523961
EST:     ACTGCACCTTTGTCACCACGCAGCAACGGCGATGAGGCTCCCTCTGAGAT                         GTCATTGTCAAGAGAAGACGACGTTTTCCTTGAAGAGTTTTCATCCGTTGA
genomic: ACTGCACCTTTGTCACCACGCAGCAACGGCGATGAGGCTCCCTCTGAGATgtaatctacc ... gtccttacagGTCATTGTCAAGAGAAGACGACGTTTTCCTTGAAGAGTTTTCATCCGTTGA
EST: gi|116481371|gb|EG523963.1|EG523963
EST:     ACTGCACCTTTGTCACCACGCAGCAACGGCGATGAGGCTCCCTCTGAGAT                         GTCATTGTCAAGAGAAGACGACGTTTTCCTTGAAGAGTTTTCATCCGTTGA
genomic: ACTGCACCTTTGTCACCACGCAGCAACGGCGATGAGGCTCCCTCTGAGATgtaatctacc ... gtccttacagGTCATTGTCAAGAGAAGACGACGTTTTCCTTGAAGAGTTTTCATCCGTTGA
EST: gi|116480540|gb|EG523132.1|EG523132
EST:     ACTGCACCTTTGTCACCACGCAGCAACGGCGATGAGGCTCCCTCTGAGAT                         GTCATTGTCAAGAGAAGACGACGTTTTCCTTGAAGAGTTTTCATCCGTTGA
genomic: ACTGCACCTTTGTCACCACGCAGCAACGGCGATGAGGCTCCCTCTGAGATgtaatctacc ... gtccttacagGTCATTGTCAAGAGAAGACGACGTTTTCCTTGAAGAGTTTTCATCCGTTGA
EST: gi|116481367|gb|EG523959.1|EG523959
EST:     ACTGCACCTTTGTCACCACGCAGCAACGGCGATGAGGCTCCCTCTGAGAT                         GTCATTGTCAAGAGAAGACAACGTTTTCCTTGAAGAGTTTTCATCCGTTGA
genomic: ACTGCACCTTTGTCACCACGCAGCAACGGCGATGAGGCTCCCTCTGAGATgtaatctacc ... gtccttacagGTCATTGTCAAGAGAAGACGACGTTTTCCTTGAAGAGTTTTCATCCGTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacattaggtttgtttatgccccatgtttatgatgaattggttggtccttacagGTCATTGTCAAGAGAAGACGACGTTTTCCTTGAAGAGTTTTCATCCGTTGACTCAGATTCTAGTGTGAACATTAGTAACAGGTTCAGTACAGACAGTTCG
                                              tccttac  CT-rich tract
          tttgtttat  TA-rich tract