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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttggaatatcttatggaattggtgtagtcttgtagagtcttgtgaaggtttggataatatatctttggtttcctatgttcttgttacagGTACCCACACTGCCTATATTTCCTTGAACTTCTTCAAAACCCCAACTTCAGGACTGCTATGGCTCATCCTGCAAACAAG

Basic information

species Arabidopsis thaliana
transcript AT5G19910.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059929|gb|DR355686.1|DR355686
EST:     TTGAAGTATCTTCAATACTGGCAGCGACCAGAGTACATCAATTTCATTAT                         GTACCCACACTGCCTATATTTCCTTGAACTTCTTCAAAACCCCAACTTCAG
genomic: TTGAAGTATCTTCAATACTGGCAGCGACCAGAGTACATCAAGTTCATTATgtaagttgga ... cttgttacagGTACCCACACTGCCTATATTTCCTTGAACTTCTTCAAAACCCCAACTTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtcttgtgaaggtttggataatatatctttggtttcctatgttcttgttacagGTACCCACACTGCCTATATTTCCTTGAACTTCTTCAAAACCCCAACTTCAGGACTGCTATGGCTCATCCTGCAAACAAG
                                  tttcctatgttctt  CT-rich tract
                   ataatatatcttt  TA-rich tract