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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatataatgtttttctcacctctatatatggttttgtgtcctttgaagaatgatgctagtaatttttggatgtgccttgttttcagGTGTTGCTGAAATCTTAATCAAAGACAAACAT

Basic information

species Arabidopsis thaliana
transcript AT5G18100.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164054049|gb|ES069208.1|ES069208
EST:     AAGAGCGTCATGCTGGCGATTTGGGTAACATTCTTGCAGGATCAAACG                         GTGTTGCTGAAATCTTAATCAAAGACAAACAT
genomic: AAGAGCGTCATGCTGGCGATTTGGGTAACATTCTTGCAGGATCAAACGgtatataatg ... ttgttttcagGTGTTGCTGAAATCTTAATCAAAGACAAACAT
EST: gi|163971940|gb|ES152668.1|ES152668
EST:     TGCTGGCGATTTGGGTAACATTCTTGCAGGATCAAACG                         GTGTTGCTGAAATCTTAATCAAAGACAAACAT
genomic: TGCTGGCGATTTGGGTAACATTCTTGCAGGATCAAACGgtatataatg ... ttgttttcagGTGTTGCTGAAATCTTAATCAAAGACAAACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtgtcctttgaagaatgatgctagtaatttttggatgtgccttgttttcagGTGTTGCTGAAATCTTAATCAAAGACAAACAT
                                           ccttgttttc  CT-rich tract
 tagtaattttt  TA-rich tract