1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cacgtagctttatcataaaaatggttggttgggttttggcgttgcttgcttcagagtatgtgaccatcctactgaaattttcttcttctcttatggacagCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCCGAGCTTATTGAAGAGAATGTGC
species | Arabidopsis thaliana |
transcript | AT5G16440.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGCTTTCAGTGTGTTTTTATTCAACTCCAAGTATGAGTTGCTTCTCCAG CAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGTEST: gi|124834593|gb|EH919032.1|EH919032
genomic: GAGCTTTCAGTGTGTTTTTATTCAACTCCAAGTATGAGTTGCTTCTCCAGgtattttctt ... ttatggacagCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGT
EST: TATGAGTTGCTTCTCCAG CAACGGTC-AAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGTEST: gi|124731097|gb|EH822499.1|EH822499
genomic: TATGAGTTGCTTCTCCAGgtattttctt ... ttatggacagCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGT
EST: GAGCTTTCAGTGTGTTTTTATTCAACTCCAAGTATGAGTTGCTTCTCCAG CAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGTEST: gi|86024858|gb|DR320611.1|DR320611
genomic: GAGCTTTCAGTGTGTTTTTATTCAACTCCAAGTATGAGTTGCTTCTCCAGgtattttctt ... ttatggacagCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGT
EST: GAGCTTTCAGTGTGTTTTTATTCAACTCCAAGTATGAGTTGCTTCTCCAG CAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGNGGACAAACACTTGTEST: gi|86024851|gb|DR320604.1|DR320604
genomic: GAGCTTTCAGTGTGTTTTTATTCAACTCCAAGTATGAGTTGCTTCTCCAGgtattttctt ... ttatggacagCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGT
EST: GAGCTTTCAGTGTGTTTTTATTCAACTCCAAGTATGAGTTGCTTCTCCAG CAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGTEST: gi|86024854|gb|DR320607.1|DR320607
genomic: GAGCTTTCAGTGTGTTTTTATTCAACTCCAAGTATGAGTTGCTTCTCCAGgtattttctt ... ttatggacagCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGT
EST: GAGCTTTCAGTGTGTTTTTATTCAACTCCAAGTATGAGTTGCTTCTCCAG CAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGTEST: gi|86024862|gb|DR320615.1|DR320615
genomic: GAGCTTTCAGTGTGTTTTTATTCAACTCCAAGTATGAGTTGCTTCTCCAGgtattttctt ... ttatggacagCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGT
EST: GAGCTTTCAGTGTGTTTTTATTCAACTCCAAGTATGAGTTGCTTCTCCAG CAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGTEST: gi|86024861|gb|DR320614.1|DR320614
genomic: GAGCTTTCAGTGTGTTTTTATTCAACTCCAAGTATGAGTTGCTTCTCCAGgtattttctt ... ttatggacagCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGT
EST: GAGCTTTCAGTGTGTTTTTATTCAACTCCAAGTATGAGTTGCTTCTCCAG CAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGKACAAACACTTGTEST: gi|86024856|gb|DR320609.1|DR320609
genomic: GAGCTTTCAGTGTGTTTTTATTCAACTCCAAGTATGAGTTGCTTCTCCAGgtattttctt ... ttatggacagCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGT
EST: GAGCTTTCAGTGTGTTTTTATTCAACTCCAAGTATGAGTTGCTTCTCCAG CAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGAACAAACACTTGT
genomic: GAGCTTTCAGTGTGTTTTTATTCAACTCCAAGTATGAGTTGCTTCTCCAGgtattttctt ... ttatggacagCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGT
ttgcttcagagtatgtgaccatcctactgaaattttcttcttctcttatggacagCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCCGAGCTTATTGAAGAGAATGTGC
ttttcttcttctctta CT-rich tract
aaattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacgtagctttatcataaaaatggttggttgggttttggcgttgcttgcttcagagtatgtgaccatcctactgaaattttcttcttctcttatggacagCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCCGAGCTTATTGAAGAGAATGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - ataaaaa
- - - - - - - - - - - - - - - -ggttttg
- - - - - - - - - - - - - - - - - - - - - - -ttgcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accatcc