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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacctctaaagatttgtttgtatatatttgtcatcaccattatttatgaggcaaaatgaatgacattctcttggtggtaatatcttatagGTTTCCATTTACGATATGGACTGGTCATGCCCAACAGCAATAGTTGTTGGAAACGAGGGCAG

Basic information

species Arabidopsis thaliana
transcript AT5G15390.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G15390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv14s0108g01380.t01 (Vitis vinifera), 3'ss of exon 2
----------------------------------------------------------------gtaaacctctaaagatttgtttgtatatatttgtcatcaccattatttatga-ggcaaaatgaatgacattctcttggtgg---taatatctt--atagGTTTCCATTTACGATATGGACTGGTCATGCCCAACAGCAATAGTTGTTGGAAACGAGGGCAG
                                                                 | | |     |   | || | | |  ||   ||    | | |   | || |    || ||   | ||     || ||||    |  |    |  ||||||||| ||||| || ||||| ||| | |||||||| ||||||||||||||||| ||    ||
gtatcaatcaacttctttccttaatgtagataatatttaaagtgatgtgcttagtttatgatatatgatctatccattttgtgatgggaattaacagttcatagcttctctaatcacaataatattcttaactgatcctgggtgtccttggtgctatgcatagGTTTCTATTTATGACATGGATTGGACCTGCCCAACTGCAATAGTTGTTGGAAATGAAAATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080510|gb|DR376267.1|DR376267
EST:     TGAAGTCTCGCGGTTACAGAATAGCTACAACTCATTTGGGAATGGACACG                         GTTTCCATTTACGATATGGACTGGTCATGCCCAACAGCAATAGTTGTTGGA
genomic: TGAAGTCTCGCGGTTACAGAATAGCTACAACTCATTTGGGAATGGACACGgtaaacctct ... tatcttatagGTTTCCATTTACGATATGGACTGGTCATGCCCAACAGCAATAGTTGTTGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accattatttatgaggcaaaatgaatgacattctcttggtggtaatatcttatagGTTTCCATTTACGATATGGACTGGTCATGCCCAACAGCAATAGTTGTTGGAAACGAGGGCAG
                                          taatatcttata  TA-rich tract