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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaaatacatcattcttagatggatcattttcgattttcttgctttcctctatctttttcacagtgtccacttttaacaatatttgcagAATATCGACAAAATACCTCTTGTGAATTGCCCGGTTCTCGTCATTCAC

Basic information

species Arabidopsis thaliana
transcript AT5G14390.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124830520|gb|EH914966.1|EH914966
EST:     AAGAGTAATGTATCCAGTGAAGAAGACATACTGGTTACGACATCTTCAAG                         AATATCGACAAAATAC
genomic: AAGAGTAATGTATCCAGTGAAGAAGACATACTGGTT-CGACATCTTCAAGgtattaaata ... atatttgcagAATATCGACAAAATAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttgctttcctctatctttttcacagtgtccacttttaacaatatttgcagAATATCGACAAAATACCTCTTGTGAATTGCCCGGTTCTCGTCATTCAC
                                     ttttaac  putative branch site (score: 2)
                                   acttttaacaatattt  TA-rich tract