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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcataaaatattgtcagtttcctctttcttttttagggagacttacaaacgtttatatatgtatgttcaatttggaagactctattttttattgattcgactcttttttcgtacatccagTGTGTTGCTTCTCATACTGATACGAGAATGTTGTTCCTAAAAG

Basic information

species Arabidopsis thaliana
transcript AT5G12980.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163980821|gb|EL994826.1|EL994826
EST:     CTAACAGGGTGTGCAATGCACTTGCTCTTCTTCAG                         TGTGTTGCTTCTCATACTGATACGAGAATGTTGTTCCTAAAAG
genomic: CTAACAGGGTGTGCAATGCACTTGCTCTTCTTCAGgtgcataaaa ... gtacatccagTGTGTTGCTTCTCATACTGATACGAGAATGTTGTTCCTAAAAG
EST: gi|19878482|gb|AU239313.1|AU239313
EST:     TGACTCCTGCTCAATCTAACAGGGTGTGCAATGCACTTGCTCTTCTTCAG                         TGTGTTGCTTCTCATACTGATACGAGAATGTTGTTCCTAAAAG
genomic: TGACTCCTGCTCAATCTAACAGGGTGTGCAATGCACTTGCTCTTCTTCAGgtgcataaaa ... gtacatccagTGTGTTGCTTCTCATACTGATACGAGAATGTTGTTCCTAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaatttggaagactctattttttattgattcgactcttttttcgtacatccagTGTGTTGCTTCTCATACTGATACGAGAATGTTGTTCCTAAAAG
                        tattgat  putative branch site (score: 3)
                                   ctcttttttcgtac  putative PPT
               tctattttttattgat  TA-rich tract