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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggggacctttaaagttgctgggtggtttcatattttggttcgtattcataagatgtcgccacagtcgaagttgaaaacaagttgttcttttctgagcagGTGGCTTTGCCGGTAACACTGGACACGATCCACATATCCTATATACACTCAGTGCTGTACAAATCTTGGCCCTATTTGACAAAATCAACATTCTTGACAT

Basic information

species Arabidopsis thaliana
transcript AT5G12210.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125266172|gb|EL280257.1|EL280257
EST:     TTCTGAAGAGGAAGTCATTTCATGGCTCATGACTTGCCAGCATGAATCTG                         GTGGCTTTGCCGGTAACACTGG
genomic: TTCTGAAGAGGAAGTCATTTCATGGCTCATGACTTGCCAGCATGAATCTGgtgagtactt ... ttctgagcagGTGGCTTTGCCGGTAACACTGG
EST: gi|19874896|gb|AU235727.1|AU235727
EST:     TTCTGAAGAGGAAGTCATTTCATGGCTCATGACTTGCCAGCATGAATCTG                         GTGGCTTTGCCGGTAACACTGGACACGATCCACATATCCTATATACACTCA
genomic: TTCTGAAGAGGAAGTCATTTCATGGCTCATGACTTGCCAGCATGAATCTGgtgagtactt ... ttctgagcagGTGGCTTTGCCGGTAACACTGGACACGATCCACATATCCTATATACACTCA
EST: gi|124926101|gb|EL003995.1|EL003995
EST:     TCATGACTTGCCAGCATGAATCTG                         GTGGCTTTGCCGGTAACACTGGACACGATCCACATATCCTATATACACTCA
genomic: TCATGACTTGCCAGCATGAATCTGgtgagtactt ... ttctgagcagGTGGCTTTGCCGGTAACACTGGACACGATCCACATATCCTATATACACTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcataagatgtcgccacagtcgaagttgaaaacaagttgttcttttctgagcagGTGGCTTTGCCGGTAACACTGGACACGATCCACATATCCTATATACACTCAGTGCTGTACAAATCTTGGCCCTATTTGACAAAATCAACATTCTTGACAT
                                     ttgttcttttct  CT-rich tract
                          ttgaaaa  TA-rich tract