Sequence
atgc intronic sequence ATGC exonic sequencegtaagtagggccttagattgtaatttctttttttctaggggaatgggatcaaactatcttttatcttctaagtgaaacctttcataggcttgccatttactttgtttgcacacagGAAGTGCCTGAGAACAAGAGGCGTGTATCAATAGTAAAAGGCGTTGTCATAGCAAGGCGTAATGCTGGTCTTAACTCAACATTTAGAATTAGAAGGCTTG
Basic information
species | Arabidopsis thaliana |
transcript | AT5G11750.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G11750.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA08G34520.1 (Glycine max), 3'ss of exon 3
gtaagtagggccttagattgtaatttctttttttctaggggaatgggatcaaactatcttttatcttctaagtgaaacctttcataggcttgccatttactttgtttgcacacagGAAGTGCCTGAGAACAAGAGGCGTGTATCAATAGTAAAAGGCGTTGTCATAGCAAGGCGTAATGCTGGTCTTAACTCAACATTTAGAATTAGAAGGCTTG
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---------------gtatggaatttattttttattcatatttgtttgtttggtttttgtttgtgatagtaatttgatcttttgtttactaa--atctgatata-------acagGAAGTACCTGAGAATAAGAGGCGTGTCTCTATTATAAAAGGCATTGTTATTGCAAGGCGTAATGCTGGACTCAATACTACATTCAGAATTAGGAGGCAGG
upper sequence: AT5G11750.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA18G08770.1 (Glycine max), 3'ss of exon 3
gtaagtagggccttagattgtaatttctttttttctaggggaatgggatcaaactatcttttatcttctaagtgaaacctttcataggcttgccatttactttgtttgcacacagGAAGTGCCTGAGAACAAGAGGCGTGTATCAATAGTAAAAGGCGTTGTCATAGCAAGGCGTAATGCTGGTCTTAACTCAACATTTAGAATTAGAAGGCTTG
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--------------ggtatggaatttattttctattcatatttgtttgcttggtttttgtttgtgatagtaatatgatcttttgttttttgtttactaacatctgatata-acaGGAAGTACCTGAAAATAAGAGGCGTGTCTCTATTATAAAAGGCATTGTTATTGCAAGACGTAATGCTGGACTCAATACTACATTCAGAATTAGGAGGCAG-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125077785|gb|EL140444.1|EL140444EST: ATAAAGCCTGGTTACATTGTTCAGCTTAAAGTG GAAGTGCCTGAGAACAAGAGGCGTGTATCAATAGTAAAAGGCGTTGTCATA
genomic: ATAAAGCCTGGTTACATTGTTCAGCTTAAAGTGgtaagtaggg ... ttgcacacagGAAGTGCCTGAGAACAAGAGGCGTGTATCAATAGTAAAAGGCGTTGTCATA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatcttctaagtgaaacctttcataggcttgccatttactttgtttgcacacagGAAGTGCCTGAGAACAAGAGGCGTGTATCAATAGTAAAAGGCGTTGTCATAGCAAGGCGTAATGCTGGTCTTAACTCAACATTTAGAATTAGAAGGCTTG
ctttgttt CT-rich tract
atttacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtagggccttagattgtaatttctttttttctaggggaatgggatcaaactatcttttatcttctaagtgaaacctttcataggcttgccatttactttgtttgcacacagGAAGTGCCTGAGAACAAGAGGCGTGTATCAATAGTAAAAGGCGTTGTCATAGCAAGGCGTAATGCTGGTCTTAACTCAACATTTAGAATTAGAAGGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG