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gtttacctctctttcttttggtttctaccctttatgtgtgtgtgtgtgcttgatgatgttgaatcttgttttgtgtgttaatctgtagAACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAAGTTAAGCGCTAAGCTCATACTAGGCGCTGACAG
species | Arabidopsis thaliana |
transcript | AT5G11520.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAG AACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAAEST: gi|301502006|gb|HO207546.1|HO207546
genomic: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAGgtttacctct ... taatctgtagAACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAA
EST: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAG AACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAAEST: gi|86054405|gb|DR350162.1|DR350162
genomic: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAGgtttacctct ... taatctgtagAACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAA
EST: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAG AACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAAEST: gi|301501550|gb|HO207090.1|HO207090
genomic: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAGgtttacctct ... taatctgtagAACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAA
EST: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAG AACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAAEST: gi|86054401|gb|DR350158.1|DR350158
genomic: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAGgtttacctct ... taatctgtagAACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAA
EST: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAG AACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGEST: gi|86054406|gb|DR350163.1|DR350163
genomic: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAGgtttacctct ... taatctgtagAACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGG
EST: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAG AACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAAEST: gi|86054403|gb|DR350160.1|DR350160
genomic: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAGgtttacctct ... taatctgtagAACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAA
EST: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCNATGACAG AACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAAEST: gi|125253412|gb|EL267497.1|EL267497
genomic: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAGgtttacctct ... taatctgtagAACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAA
EST: TGAGGAAAGCTGAGCAGCAGCTTATCAATGACAG AACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAAEST: gi|301501070|gb|HO206610.1|HO206610
genomic: TGAGGAAAGCTGAGCAGCAGCTTATCAATGACAGgtttacctct ... taatctgtagAACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAA
EST: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAG AACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAAEST: gi|86054404|gb|DR350161.1|DR350161
genomic: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAGgtttacctct ... taatctgtagAACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAA
EST: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAG AACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAAEST: gi|86054407|gb|DR350164.1|DR350164
genomic: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAGgtttacctct ... taatctgtagAACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAA
EST: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAG AACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAAEST: gi|86054402|gb|DR350159.1|DR350159
genomic: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAGgtttacctct ... taatctgtagAACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAA
EST: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAG AACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAAEST: gi|116468511|gb|EG511103.1|EG511103
genomic: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAGgtttacctct ... taatctgtagAACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAA
EST: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAG AACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAAEST: gi|125001819|gb|EL074088.1|EL074088
genomic: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAGgtttacctct ... taatctgtagAACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAA
EST: TGGTTCTTTAATGT-GTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAG AACAAGAATCAAGGAGTATCTTCCCATTGEST: gi|86054408|gb|DR350165.1|DR350165
genomic: TGGTTCTT-AATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAGgtttacctct ... taatctgtagAACAAGAATCAAGGAGTATCTTCCCATTG
EST: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAG AACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAA
genomic: TTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTATCAATGACAGgtttacctct ... taatctgtagAACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAA
atgtgtgtgtgtgtgcttgatgatgttgaatcttgttttgtgtgttaatctgtagAACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAAGTTAAGCGCTAAGCTCATACTAGGCGCTGACAG
tgttaat putative branch site (score: 3)
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttacctctctttcttttggtttctaccctttatgtgtgtgtgtgtgcttgatgatgttgaatcttgttttgtgtgttaatctgtagAACAAGAATCAAGGAGTATCTTCCCATTGTTGGATTGGTTGAGTTCAACAAGTTAAGCGCTAAGCTCATACTAGGCGCTGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA