1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tggtgctaattaacttcgtgttctcgctgtaacgtagcttatatcttagtattgacattagaaaacaagaaattaataatgttacttactgttttgccagGCCATGGTGGAGCCAGAGCAGCTGAGTACGTGAAGCGCCATCTTTTCAGTAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAA
species | Arabidopsis thaliana |
transcript | AT5G10740.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATCGACGGTATCAATGGAGAAATAGTTGGTCTATTTGGAGTTTTTGATG GCCATGGTGGAGCCEST: gi|116398391|gb|EG440983.1|EG440983
genomic: GATCGACGGTATCAATGGAGAAATAGTTGGTCTATTTGGAGTTTTTGATGgtatcttccc ... gttttgccagGCCATGGTGGAGCC
EST: GATCGACGGTATCAATGGAGAAATAGTTGGTCTATTTGGAGTTTTTGATG GCCATGGTGGAGCCAGAGCAGCTGAGTACGTGAAAGCGCCCATCTTTTTCAEST: gi|116449506|gb|EG492098.1|EG492098
genomic: GATCGACGGTATCAATGGAGAAATAGTTGGTCTATTTGGAGTTTTTGATGgtatcttccc ... gttttgccagGCCATGGTGGAGCCAGAGCAGCTGAGTACGTGAA-GCGCC-ATCTTTT-CA
EST: GATCGACGGTATCAATGGAGAAATAGTTGGTCTATTTGGAGTTTTTGATG GCCATGGTGGAGCCAGAGCAGCTGAGTACGTGAAGCGCCATCTTTTCAGTAEST: gi|19877556|gb|AU238387.1|AU238387
genomic: GATCGACGGTATCAATGGAGAAATAGTTGGTCTATTTGGAGTTTTTGATGgtatcttccc ... gttttgccagGCCATGGTGGAGCCAGAGCAGCTGAGTACGTGAAGCGCCATCTTTTCAGTA
EST: GATCGACGGTATCAATGGAGAAATAGTTGGTCTATTTGGAGTTTTTGATG GCCATGGTGGAGCCAGAGCAGCTGAGTACGTGAAGCGCCATCTTTTCAGTAEST: gi|164220502|gb|ES039610.1|ES039610
genomic: GATCGACGGTATCAATGGAGAAATAGTTGGTCTATTTGGAGTTTTTGATGgtatcttccc ... gttttgccagGCCATGGTGGAGCCAGAGCAGCTGAGTACGTGAAGCGCCATCTTTTCAGTA
EST: GATCGACGGTATCAATGGAGAAATAGTTGGTCTATTTGGAGTTTTTGATG GCCATGGTGGAGCCAGAGCAEST: gi|116449507|gb|EG492099.1|EG492099
genomic: GATCGACGGTATCAATGGAGAAATAGTTGGTCTATTTGGAGTTTTTGATGgtatcttccc ... gttttgccagGCCATGGTGGAGCCAGAGCA
EST: GATCGACGGTATCAATGGAGAAATAGTTGGTCTATTTGGAGTTTTTGATG GCCATGGTGGAGCCAGAGCAGCTGAGTACGTGAAGCGCCATCTTTTCAGTA
genomic: GATCGACGGTATCAATGGAGAAATAGTTGGTCTATTTGGAGTTTTTGATGgtatcttccc ... gttttgccagGCCATGGTGGAGCCAGAGCAGCTGAGTACGTGAAGCGCCATCTTTTCAGTA
ttagtattgacattagaaaacaagaaattaataatgttacttactgttttgccagGCCATGGTGGAGCCAGAGCAGCTGAGTACGTGAAGCGCCATCTTTTCAGTAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAA
tacttac putative branch site (score: 1)
ctgtttt CT-rich tract
attagaaaacaagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtgctaattaacttcgtgttctcgctgtaacgtagcttatatcttagtattgacattagaaaacaagaaattaataatgttacttactgttttgccagGCCATGGTGGAGCCAGAGCAGCTGAGTACGTGAAGCGCCATCTTTTCAGTAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacaa