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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatttcaaacaaaatttactctagcctttcaaattcggttgctgatagttagtaacattacttttctgcttatagTTGGGACAACATGGTTTCAGCAACATATTACTCTCAAATTACCTTCGTAGGCCTATTTGTTCAGTTCCATGCAGAACCACCGCTTTTAGGTGTCATTCCT

Basic information

species Arabidopsis thaliana
transcript AT5G10490.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116441938|gb|EG484530.1|EG484530
EST:     TGAGAAGGAGGCTGCATATATCAAATGGTCCTCTCTCATTAGGTGTTCCG                         TTGGGACAACATGGTTTCAGCAACATATTCCTCTCAAATTACCTTCGTAGG
genomic: TGAGAAGGAGGCTGCATATATCAAATGGTCCTCTCTCATTAGGTGTTCCGgtaatatttc ... ctgcttatagTTGGGACAACATGGTTTCAGCAACATATTACTCTCAAATTACCTTCGTAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagcctttcaaattcggttgctgatagttagtaacattacttttctgcttatagTTGGGACAACATGGTTTCAGCAACATATTACTCTCAAATTACCTTCGTAGGCCTATTTGTTCAGTTCCATGCAGAACCACCGCTTTTAGGTGTCATTCCT
                             tagtaac  putative branch site (score: 1)
                                     ttacttttctgctt  CT-rich tract
      tttcaaatt  TA-rich tract