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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaattttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattgtgtgtgttttgagctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC

Basic information

species Arabidopsis thaliana
transcript AT5G10360.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 3
gtgaaatttttt-ctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattgtgtgtgttttgagctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC
|| |  | |||  |   | | ||  || || || |   |||||||  | || | |    |  |    | |  || ||| |     | | | |||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||| || || || || ||| | || |||||||| ||| | |
gtaatttctttggcaatttgctccatgattctt-caactgtcttgcta-tttaatgagttggatg--actaagtttgtctg----tttgtacagGAATTCAAGGGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCC

upper sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 3
gtgaaattttttctcctg-gttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattgtgtgtgttttgagctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC
        |  | || || |  |  || | ||| || ||  ||     |||   ||  ||||| |   |    | | | |     | ||  |||||||||||||| || || |||||||||||||| || ||||||||||| |||||||| ||||| || ||||| |||||| | || |||||||| ||| | |
-------gtaatatcgtgaggcctctgatgtttcctaattact-----gttacctagtcttaagatgttaacatatctctctcctttttctcagGAATTCAAGGGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTC

upper sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G054136_T09 (Zea mays), 3'ss of exon 3
gtgaaattttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattgtg-tgtgttttgagctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC
|| ||    |||    ||  | | |  ||  | |     |||||    ||   ||   | || | |  |||| | |||||     | ||||||||| |||||||| || || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | ||| | || ||||| |||||| |||
gtaaa---ctttgggatgacttatttcttgatccatgactcttgctgatttcatac-ttaaatataggtgtgatatgtttctttgt-tttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
-------------------gtgaaatt--ttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattg-tgtg-tgttttgagctattt-gcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC
                   ||||  |    |||    ||  | | |  ||  | |     |||||    ||    |||||||| |  || | |||| | | ||    | ||| |||||| |||||||| || || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | ||| | || ||||| |||||| |||
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgattt--catacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G054136_T05 (Zea mays), 3'ss of exon 3
----gtgaaatt--ttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattg-tgtg-tgttttgagctattt-gcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC
    ||||  |    |||    ||  | | |  ||  | |     |||||    ||    |||||||| |  || | |||| | | ||    | ||| |||||| |||||||| || || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | ||| | || ||||| |||||| |||
ctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgattt--catacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G040600_T01 (Zea mays), 3'ss of exon 5
--gtgaaattttt--tctcctggttcagtgttttttt--ctgatgtcttgtgagttcagtatacttaa-cagaattgtg-tgtgttttgagctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC
  ||  |||||     ||   || | | |  ||| ||     ||| ||  ||        ||||||||  | |  |||| | ||||      | ||||||||| |||||||| || || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | ||| | || ||||| || ||| |||
gagttgaatttacaaactttgggatgacttatttcttgatccatgactcttgctgatgtcatacttaaatataggtgtgatatgttcctttgt-tttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGGTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGCCTTCTGC

upper sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G054136_T01 (Zea mays), 3'ss of exon 3
gtgaaattttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattg-tgtg-tgttttgagctattt-gcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC
|| ||    |||    ||  | | |  ||  | |     |||||    ||    |||||||| |  || | |||| | | ||    | ||| |||||| |||||||| || || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | ||| | || ||||| |||||| |||
gtaaa---ctttggggtgacttatttcttgatccatgactcttgctgattt--catacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
gtgaaattttttctc-ctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaac-agaattgtg-tgtgttttgagctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC
|| || ||| | ||  ||  ||   || |   | |       |  ||| ||||   |||||||  | |  |||| |||||||     | ||||||||| || ||||| || || |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| ||| | || |||||||| ||| |||
gtaaattttctgctttcttatttcttgatccatgccccctattgctgatttca---tacttaattataggtgtgatgtgtttc---ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC

upper sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 4
------------gtgaaattttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattgtgtgtgttttgagctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC
             || |||  || | |   || ||||||||  |    |    |  | | |    |   ||||      || | | |||||||  ||| |||||||||||||| || || || ||||| || |  ||||| || ||||||||||| || |||||||| ||||||||  | || || || ||||| || || ||||
gtatggttttggctggaatccttccac--agtgcagtgtttcctgagaaacattgatcaat--gattggcttattctccttttct-tgttttg--ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC

upper sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
gtgaa-attttttctcctggttcagtgttttt-ttctgatgtcttgtgagttcagtatacttaacagaattgtgtgtgttttgagctatttg-cagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC
|| |  ||||    |  |  | || ||      ||||  | ||        |   | ||  |||||    | | ||| | ||    | | || |||||||| || || || |||||||| ||||||||||| |||||||||||||| ||||||||||| || |||||  | ||||| || |||||  |||| ||||
gtaagcatttaccattgttatgcaatgccaaaattctactatc----agactagatttatataacatttatttttgtttgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC

upper sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
gtgaaattttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattgtgtgtgttttgagctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC
        | |  |  || | |  | | || ||  |||  ||||    ||   ||    | |   | |  ||| | ||  | |   ||  ||||| |||||||| || |||||||| || |||||||| ||||||||||||||||| |||||||| || ||||| || || ||||| || ||||  ||| |||
-------gtatgattttgttactat-tcttcttaggataacttgccc-tttgttaggaatgatttattgatgtatcttaagcgtgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC

upper sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 3
gtgaaattttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattgtgtgtgttttgagctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC
|| |    |||||| ||  |       || ||| |    | ||||  | ||     |    ||| ||       |||  |  |||  |  ||||| |||||||| || || |||||||||||||| || |||||||||||||| || || ||||| || ||||| || ||||| || |||||  |||||||||
gt-atgccttttctgctcttctcccacttatttatctcatattgtttgatctactaatcatacaaaa-----catgtcatctgct--tcacagGAGTTCAAGGGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGC

upper sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S311_33V6.1 (Physcomitrella patens), 3'ss of exon 2
--------------gtgaaattttttctcctggttcagtgtttttt-tctgatgtcttgtgagttcagt-atacttaacagaattgtgtgtgttttgagctatttgcagGAA--TTCAAGGGATACGTATTCAAGATCATGGGAGGAT--GTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTC--TTTTGC---------------------------------------------------------------------------------------
              |   | ||| |||      ||| || || |   | ||||   |||| ||| |  | || |  |   ||||  ||| |  || || || | ||  |  |  ||  |  | ||   ||  | |    |      ||  | |   ||  |||   |    |||  | |  |     ||||       ||   ||||  ||||                                                                                         
gtgagtattgttgcgctgattttattcgaggatttctgtattctcgatttgattagttgttagtgccctcatgcggattcgaatcttgttttcttagatctctatggcgctacctttcaatgttataaatgtagggaggtaaagttattagggtttagtgaggagactt--tgagtctaatatcctgcacttgcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTTGGTGATGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGAC

upper sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S311_33V6.2 (Physcomitrella patens), 3'ss of exon 3
gtgaaattttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattgtgtgtgttttgagctatttgcag-
                                                                       ||  ||  ||| |   |||  |  || |||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||| || || ||  | || |  || ||||| |  ||  ||          
-----------------------------------------------------------------------gtcagtggtgaccagcttggtgatgagttcaagggatacgttttcaagattatgggaggatgtgacaagcagggtttccccatgaagCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG

upper sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
gtgaaattttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattg-tgtgtgttttgagctatt---tgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC
                                           |||| ||| ||   | |   ||  ||| ||| |||| | || | |    ||||||||||||| || || || ||||||||||||||||||||||||||| | || ||||| ||||| || || || ||||   |   |||||| || ||  || 
-------------------------------------------gtgaattc-gtcggcatttgagctttgctgtttgttctaagatttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT

upper sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EFJ26393 (Selaginella moellendorffii), 3'ss of exon 2
gtgaaattttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattg-tgtgtgttttgagctatt---tgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC
                                           |||| ||| ||   | |   ||  ||| ||| |||| | || | |    ||||||||||||| || || || ||||||||||||||||||||||||||| | || ||||| ||||| || || |||||||   |   |||||| || ||  || 
-------------------------------------------gtgaattc-gtcggcatttgagctttgctgtttgttctaagatttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124789122|gb|EH878801.1|EH878801
EST:     TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCGAGGGATACGTATT
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATT
EST: gi|116469836|gb|EG512428.1|EG512428
EST:     TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
EST: gi|125219080|gb|EL233165.1|EL233165
EST:     TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATAC
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATAC
EST: gi|164196132|gb|ES166821.1|ES166821
EST:     GGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
genomic: GGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
EST: gi|164035006|gb|ES145970.1|ES145970
EST:     GGAAGTTAGCGGAGATGCTCTAGGCGAG                         GTAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGG
genomic: GGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagG-AATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGG
EST: gi|116469839|gb|EG512431.1|EG512431
EST:     TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
EST: gi|164018926|gb|ES077213.1|ES077213
EST:     GACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATACGTATTCAAGATCATGGGAGG
genomic: GACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGG
EST: gi|124731981|gb|EH823383.1|EH823383
EST:     TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATACGTATTCAAGATCATGGG
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGG
EST: gi|125034291|gb|EL106560.1|EL106560
EST:     TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAA
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAA
EST: gi|164107881|gb|ES007223.1|ES007223
EST:     TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATACGTATTC
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttgtgagttcagtatacttaacagaattgtgtgtgttttgagctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC
                  acttaac  putative branch site (score: 3)
               tatacttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgaaattttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattgtgtgtgttttgagctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG