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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatgatatagttagtcaaatgctgttggtagtacattttattgcttgtgttttgatctgtatttctgatgcaagcagATGTTATTTAACAAGGCGAATCTAGCTATAGAAAGAGGAGAGAAAGTCGCTATAATTGGTCCAAACGGGTGCGGAAAGAGTACATTGCTGAAACTTATTA

Basic information

species Arabidopsis thaliana
transcript AT5G09930.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G09930.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv07s0031g01640.t01 (Vitis vinifera), 3'ss of exon 3
----------------------------gtgagatgatatagttag-tcaaatgctgt-tggtagtacattttattgcttgtgttt-tgatctgtatttctgatgcaagc-agATGTTATTTAACAAGGCGAATCTAGCTATAGAAAGAGGAGAGAAAGTCGCTATAATTGGTCCAAACGGGTGCGGAAAGAGTACATTGCTGAAACTTATTA
                            |   ||| | |  ||||  |    |||| | || |  |    |  ||  |||   | | |||| |  || |    | |  || || |  ||||||| ||||| || ||  | || ||||| ||||| ||| | || || ||||| ||||||||||| ||||||||||| ||||| ||||| ||||
gtgagtgacttgttcaacaaaatgagaagaaggataacagtgttaaattttctgctttctgattattgtgtacatatcttacttgtatgatattcatatgcattacttgccagGTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCAATTATTGGCCCAAACGGGTGTGGAAAGAGTACTTTGCTTAAACTGATTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttggtagtacattttattgcttgtgttttgatctgtatttctgatgcaagcagATGTTATTTAACAAGGCGAATCTAGCTATAGAAAGAGGAGAGAAAGTCGCTATAATTGGTCCAAACGGGTGCGGAAAGAGTACATTGCTGAAACTTATTA
                                        ttctgat  putative branch site (score: 3)
      tagtacattttatt  TA-rich tract