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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcctttttctgaattagtttgattcaaagtttttaagtaatcgttgctttgacatgcttccttcttgatgagtgagattttacagtcactggtttaattctatagttttgtgagaatatgctattccttaactcaacttttgcagAATACTAAGCAGACATCAACTCACTGAGTTTGAG

Basic information

species Arabidopsis thaliana
transcript AT5G09920.1
intron # 3
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125017493|gb|EL089762.1|EL089762
EST:     ACAAGAATCCAGATGCTGTTAGACAAGTTCGAGA                         AATACTAAGCAGACATCAACTCACTGAGTTTGAG
genomic: ACAAGAATCCAGATGCTGTTAGACAAGTTCGAGAgtatcctttt ... acttttgcagAATACTAAGCAGACATCAACTCACTGAGTTTGAG
EST: gi|86077577|gb|DR373334.1|DR373334
EST:     AAGCGATTCAGCCGCTACAAGAATCCAGATGCTGTAAGACAAGTTCGAGA                         AATACTAAGCAGACATCAACTCACTGAGTTTGAG
genomic: AAGCGATTCAGCCGCTACAAGAATCCAGATGCTGTTAGACAAGTTCGAGAgtatcctttt ... acttttgcagAATACTAAGCAGACATCAACTCACTGAGTTTGAG
EST: gi|164181711|gb|ES049029.1|ES049029
EST:     GACAAGTTCGAGA                         AATACTAAGCAGACATCAACTCACTGAGTTTGAG
genomic: GACAAGTTCGAGAgtatcctttt ... acttttgcagAATACTAAGCAGACATCAACTCACTGAGTTTGAG
EST: gi|163979944|gb|ES046053.1|ES046053
EST:     TGCTGTTAGACAAGTTCGAGA                         AATACTAAGCAGACATCAACTCACTGAGTTTGAG
genomic: TGCTGTTAGACAAGTTCGAGAgtatcctttt ... acttttgcagAATACTAAGCAGACATCAACTCACTGAGTTTGAG
EST: gi|164026934|gb|ES109190.1|ES109190
EST:     AAGCGATTCAGCCGCTACAAGAATCCAGATGCTGTTAGACAAGTTC-AGA                         AATACTAAGCAGAC
genomic: AAGCGATTCAGCCGCTACAAGAATCCAGATGCTGTTAGACAAGTTCGAGAgtatcctttt ... acttttgcagAATACTAAGCAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttaattctatagttttgtgagaatatgctattccttaactcaacttttgcagAATACTAAGCAGACATCAACTCACTGAGTTTGAG
 ttccttaac  putative branch site 
                                              cttttgc  putative PPT
     aattctatagtttt  TA-rich tract