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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttcttaactctaaacatccaagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG

Basic information

species Arabidopsis thaliana
transcript AT5G09810.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 3'ss of exon 3
------gttagttcttaact-ctaaacatccaagtctgagttatattatcttcttacttgt-atttacttaaagtcgttctctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
      ||   || |  |||  | || ||     | ||     |   ||||  | | | || || |      |||   |      ||||  ||||||||||||| |||||||||||||||||| ||||||| ||||||||||| || || ||||| |||||||||||||| |||||  | |||||||| |||||
gcatgtgtccattttctactattcaaaatgagtctttgtacacttacatctcttcattggtgatatgaccccagtgcgttgtggcttgtg-cagGTATTGTGCTTGATTCTGGTGATGGTGTGACTCACACAGTGCCAATCTATGAAGGATATGCACTTCCTCATGCTATTCTTCGGTTGGATCTTGCTGGTCG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 3'ss of exon 3
-----------gttagttcttaactctaaacatccaagtctgagttatattatcttct--tacttgtatttacttaaagtcgttctctttttg--taacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
           |||||   |  | | |  |    |||   | |||  |   ||  | |  |  | ||   | | ||  |    |    ||||    |||||||||||| || || || ||||||||||||   || ||||| || ||||| || || ||||| ||||||||||| ||||||||||| |||||||| || ||
ggtcagtaggtgttagaattatattatctatgctcaataat-agtcgtgcaattatttaatgttggtcagtgcatatggctaatgctgttttaatcaacagGTATTGTTCTGGACTCGGGTGATGGTGTGAGCCATACTGTTCCCATCTATGAAGGATATGCACTTCCTCATGCAATCCTTCGTCTGGATCTTGCTGGCCG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 3
-----------gttagttcttaactctaaacat-ccaagtctgagttatattatcttcttacttgtatttacttaaagtcgt--tctctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
           |||| | | |   | || | ||   |      |   | | | || |  |  |      || ||    || |  | | ||||   || |||||||||  | |||||||| ||||||||   |||||| || ||||||||||| || ||||| ||||| ||||| || || |||||||||||||| ||| |
ataaaatttaagttactgccttgttttacagatgttacaatacacaaaaactgtcattatgttctctcgtaatttgtttcttgatattttttgtcaatagGTATTGTCTTGGATTCTGGAGATGGTGTCAGTCACACAGTCCCAATCTACGAAGGTTATGCCCTTCCGCATGCCATTCTCCGTCTTGATCTTGCTGGTAG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 3
gttagttcttaactctaaacatccaagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctttttgta-acagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
         | | | | | | |   | |     |  | |||   |   |  ||| ||       |||    ||  |||| |   ||||||| ||||| || |||||||||||||||   |||||||| ||||| || || || ||| | ||||||||||||||||| ||  | |||||||| || ||
------gtatgattattacctttgcaat--agatcgtgttaaaattcaa--tgtgttggggggcagtgacacttcttttatctgcagGTATCGTGCTTGACTCTGGTGATGGTGTGAGCCACACTGTTCCAATATATGAAGGATATACGCTTCCTCATGCTATCCTCCGGTTGGATCTTGCTGGCCG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 3'ss of exon 3
gttagttcttaactctaaacatccaagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
      |  |||||| |  ||      |  ||||| ||  |  |  | |||| |||| |   |  || | |||     ||   ||||||| ||| | || ||||||||||||||    ||||| ||||||||||| || || ||||| ||||||||||| ||||| ||||| || ||||| || ||
-----gtaataactc-actcacatggttgagagttttaaaaaatattcactt-tattcatgaactgttgctct-----tgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATGAAGGATATGCCCTTCCTCATGCCATCCTGCGTCTGGACCTTGCTGGGCG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 3
---------------------gttagttcttaactctaaacatccaagtctgagttatatt-atcttctta-cttgtatttacttaaagt-cgttctctt-tttgtaa---cagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
                        |    ||   | | ||||| |   ||| |   | ||| || ||  || |   |   || |  || | || |  ||  ||| |||   |||||||||| || || ||||||||||||||   ||||||||| ||||| ||||| || | | | || || |||||||| ||||| || |||||||| || ||
gtatgatgattgctgtacaaaaaaaaccatttgattttaacatacttatctaaaaaaaattgattttaatatccaatgagtagtcgaactgcgctaactagtttataaatgcagGTATTGTACTTGACTCTGGTGATGGTGTAAGTCACACTGTTCCAATATACGAAGGATTTACACTCCCGCATGCTATTCTTCGACTCGATCTTGCTGGGCG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G053299_T01 (Zea mays), 3'ss of exon 3
-----------------------gttag----ttcttaactctaaacatccaagtctgagttat--attatcttcttacttgtatttact--taaagtcgttctctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
                        |||     ||  ||   | |    ||  | |||  || ||   | ||||    ||     | ||||    | |||    |  | |     |||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| || || || |||||||| || ||| | || |||||||| || ||
gcacgtgtccactttcacctcttattaaagtttttctaggacaacgtctctgattctc-gtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACGAGGGATACGCGCTCCCTCATGCCATTCTTAGGCTGGATCTTGCTGGCCG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
---------gttagttcttaactctaaacatccaagtctgagttatattatcttcttacttgtatttac-ttaaagtcgttctctttttgtaa----cagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
          | |    | ||   ||||||    |   | |     ||| | | | |  |     | |  ||   |   || | ||||   ||    |||||||||| ||||| |||||||||||||||  |||||||||||| || || || || ||||| ||||| ||||| || |||||||| |||||||| |||||
aaaataagcataatacatcaataataaacaatggaagttaaacataattgtttacatggtgtggctgatgtttccgcttttttattttctcaatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
-------gttagttcttaactctaaacatcca---agtctgagttatattatct-tcttacttgtatttacttaaagtcgttctctttttgta---acagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
         | |   ||||   |||   |  |    || ||  | |  ||  || | || ||| | ||| | | |  | |||  |||| |  |   ||||||||||| ||||| |||||||||||||||   ||||||||||| || ||||| || ||||| ||||||||||| || |||||| | |||||||| |||||
aataaaatatggaagttaaacttaattgtttacatggtgtggctgaagtttcctctttttcttttttttcccttatcttgtttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 3
-----gttagttctta-actctaaacatccaagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctttttgta--------acagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
      | || |  || ||    || |   ||         | ||||  |  ||||  |   | ||| ||  |   ||| ||||| |         ||||||||||| |||||||||||||||||||||   || |||||||| || || || || ||||| |||||||||||||| || ||||| |||||||| |||||
agtatctcagctagtataccaagaataaataacggaagtcaaaattagttgtttacacggtgtgactgaagtttcctctttttttattctcaatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
gttagttcttaactctaaacatccaagtctgagttatattat--cttcttacttgtatttacttaaagt-cgttctctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
    ||  | |    | |||||    | |  | ||  ||||   ||||  |  | | |  |  | || |  |   |  | ||    ||||||||||| | || ||||||||||||||    ||||| |||||||||||||| || ||||| ||||||||||| ||||| |||||||| ||||| || ||
----gtaatgattctttaacatg-gtgaccaaatttcattaggacttcccaaatttttccatctcaattatggattgctgttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G437445_T01 (Zea mays), 3'ss of exon 4
gttagttcttaactctaaacatccaagtctgagttatattatcttcttacttgta-tttacttaa-agtcgttctctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
    ||   | |||  |       || ||||  | |||| | | |   | |  || | || | |    | |   ||||| ||   |||||||||||||||| |||||||||||||||   ||||| || || |||||||| |||||  | |||||||||||||| |||||  | || ||||| |||| 
----gtatgttactgca-----ttaaatctgtttcatatcagcattcaaataatagtgtagtcagtgataggaatctttctg---cagGTATTGTGCTCGACTCTGGTGATGGTGTGAGCCACACCGTCCCTATCTACGAAGGGTACACGCTTCCTCATGCTATTCTTCGATTGGACCTTGCTGGTCA

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G067985_T05 (Zea mays), 3'ss of exon 4
gttagttcttaactctaaacatccaagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG-----------
                                                                                                 || |||||||||||||||   ||||||||||| || ||||| || ||||| ||||||||||| || |||||| | |||||||| |||||           
------------------------------------------------------------------------------------------------tGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCGGGACCTCACAG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G067985_T03 (Zea mays), 3'ss of exon 2
----------------gttagttcttaactctaaacatccaagtctgagttatat-tatcttcttacttgtatttacttaaagtcgttctctttttgtaacagGTATTGTGCTC-GATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
                 | |    | ||   |    |   ||  || | || | |  ||  | |  || || ||| ||     |  |||||  | |    |||||||||| ||  || |||||||||||||||   ||||||||||| || ||||| || ||||| ||||||||||| || |||||| | |||||||| |||| 
aaaatgagtataatatatcaagaataaataatgggaagttaaaacttaattgtttacatggtgtggctggtgtttcctctttttttttctcaatctt---cagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTC-

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G053284_T01 (Zea mays), 3'ss of exon 3
gttagttcttaactctaaacatccaagtctgagttatattatcttcttacttgta-----tttacttaaagtcgttc-tctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
    || | | ||  |       | |  |||  | || | | | |   | | | |     | || | |  | ||    ||||| |||  |||||||||||||||| |||||||| || |||   |||||||| || |||||||| |||||  | ||||||||||||||  ||||  | || ||||| |||||
----gtacgttacgttgctgcatcgaacctgtttcatgtcagcattcgaatagcagtacgtgtagtgagtggcgacaatctttctgtg-cagGTATTGTGCTCGACTCTGGTGACGGCGTGAGCCACACTGTCCCCATCTACGAAGGGTACACGCTTCCTCATGCTATTATTCGATTGGACCTTGCCGGTCG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 3
gttagttcttaactcta-aacatccaagtctgagttata-ttatcttcttacttgtatttacttaaagtcgttctctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
|| |   ||       |   |  |||| | | | |   | |||     || |   | || | |    || | | |   |   |  ||||||||||  | || ||||||||||||||    ||||| ||||||||||| || || ||||| ||||||||||| ||||| || ||||| ||||| || ||
gtaatgactcgttcacatggcgaccaaatttcattaggacttacaaattttcccatcttaattatgggttgctgttcatcatt--cagGTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATGAAGGTTATGCCCTTCCTCATGCCATCCTGCGCCTTGACCTTGCTGGGCG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G126010_T01 (Zea mays), 3'ss of exon 3
----gttagttcttaactc---taaacatccaagtctgagttatatt-atc-ttcttacttgtatttacttaaagtcgttctctttttgtaa------------cagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
    | | | | |   |||   || | ||     | ||   || |   ||| | | ||| |      |     |  || ||||||| |  ||            ||||||||||| | ||||| ||||||||||||   ||||| || |||||||| || || ||  | |||||||||||||| || ||| | ||||||||||| ||
gtaagatggctgtcgcctcagatatatatagtgatatgcactacaaagatcatacatacatacggcaatcctgacacggtctctttgtcaaatatctctgtgtgcagGTATTGTGATGGATTCCGGTGATGGTGTGAGCCACACGGTTCCAATCTATGAAGGATACACACTTCCTCATGCTATTCTCCGTTTGGATCTTGCGGGGCG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G082484_T01 (Zea mays), 3'ss of exon 3
-gttagttcttaactctaaacatccaagtctg-agttatattatcttcttacttgtatttactta--------aagtcg---ttctctttttgt-aacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
 | |   |      | |    ||  || |    ||  ||||| || | ||  ||  | | | ||         |  | |   || | |||| ||  ||||||||||| || |||||||| || |||||    |||||||| |||||||| || || ||||| || || ||||| || |||||||| |||||||| ||| |
tgctgcataaatgatatggggatagaaatggatagaaatattttcctttttatttcactcagttgctcaatgcacattgggattttgttttggttgacagGTATTGTCCTGGATTCTGGAGACGGTGTCAGCCACACTGTCCCAATCTATGAAGGCTATGCCCTCCCGCATGCCATTCTTCGTCTCGATCTTGCTGGTAG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 2
gttagttcttaactctaaacatccaagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
||| ||   | ||  |     ||    |     || | ||||  ||  |    | ||| | | ||    |||   |||   ||||||||||||| | || |||||||||||||||  ||||||||| |||||||| ||||||||||| || || ||||| ||||||||| | ||||| || |||||
gtttgtatattaccatc--tgtcttgattca--ttcttttataatcacatcattctttccctgaatcaattcc--tttcaaaacagGTATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCAGGTCG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 3
gttagttcttaactctaaacatccaagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
||| ||   || | | |    ||    |     || | ||||  ||  | |  | ||| | | ||    |||   ||||  ||||||||||||  | || |||||||||||||||  ||||||||| |||||||| ||||||||||| || || ||||| ||||||||| | ||||| || |||||
gtttgta--tatcaccatctgtcttgattca--ttcttttataatcacattgttctttccctgaatcaattcc--ttttaaaacagGTATTGTATTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCTGGTCG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
gttagttcttaactctaaacatccaagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
||| || ||||  || |    ||  | |      |   || |||||  | |  | | | ||| ||     |||  ||||| | ||||||||||  | || |||||||||||||||  |||||||||||||||||| ||||| ||||| || |||||||| || || ||| | |||||||| || ||
gtttgtacttatttccatctgtcttaattca--ctcctttgtcttcacattgttctatccttgaatcaaatct--ttttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
gttagttcttaactctaaacatc-caagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
||| ||  ||   || |    |  ||| ||  |||| | | |||   ||  |    ||| | | || ||     |||| || ||||||||||||  | || ||||| ||||||||   |||||||||||||||||| ||||| ||||| || |||||||| || |||||| | |||||||| || ||
gtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttc---tttccctgaa-tcaaatactttctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 4
gttagttcttaa--ctctaaacatccaagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctttttgtaac-agGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
||| ||  | ||  || |    ||   | | |   || |  | |  | ||  | || |   || |         |  |  | | || |||||||||||| ||||||||||||||||||  ||||||||||||||| || || || ||||| ||||| |||||||||||||||||||| ||||| || ||
gttcgtattaaaatctttttggattggaattttcatttttcttttctgttgttagtgtagcctgagttctaacttgctcctttgactagGTATTGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTGCCAATTTATGAAGGTTATGCACTTCCCCATGCTATCCTTCGTCTTGACCTTGCTGGACG

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S372_48V6.1 (Physcomitrella patens), 3'ss of exon 2
----gttagttcttaactctaaacatccaagtctga--gttatattatcttcttacttgtatttacttaaagtcgttctctttttgta------acagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
    ||  |   | |    | |        |  ||   ||  ||  || |        |   | | | | |   | | |     ||         ||||||| ||||| ||||| || || || ||| | ||||| |||||||||||||||||||| || || || || || || || || || || || ||||| ||
gtgagtggggagtgagtggtgagggggtggggatggtggtggtaggatgtggaggtgggaggtgattgagaacagatgtggcggtgcgtggaatgcagGTATCGTGCTGGATTCGGGGGACGGCGTGACGCACACGGTGCCAATCTACGAGGGGTACGCGCTGCCGCACGCGATTCTGCGACTGGACCTGGCGGGGCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47829008|gb|CK118692.1|CK118692
EST:     TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGCGGTCGTACAACCG                         GCATTGTGCTCGATTCTGGTGATGGCGCGTCTCACACTGTGCCAATCTACG
genomic: TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGgttagttctt ... tttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
EST: gi|47829009|gb|CK118693.1|CK118693
EST:     TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCG                         GTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
genomic: TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGgttagttctt ... tttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
EST: gi|116471446|gb|EG514038.1|EG514038
EST:     TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCG                         GTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
genomic: TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGgttagttctt ... tttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
EST: gi|125184103|gb|EL199057.1|EL199057
EST:     TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCG                         GTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACT
genomic: TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGgttagttctt ... tttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACT
EST: gi|124930097|gb|EL007578.1|EL007578
EST:     TCTCTATGCCAGTGGTCGTACAACCG                         GTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
genomic: TCTCTATGCCAGTGGTCGTACAACCGgttagttctt ... tttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
EST: gi|164083419|gb|ES003474.1|ES003474
EST:     TGCCAGTGGTCGTACAACCG                         GTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
genomic: TGCCAGTGGTCGTACAACCGgttagttctt ... tttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
EST: gi|125286026|gb|EL300111.1|EL300111
EST:     CCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCG                         GTATTGTGCTCGATTCTGGTGATGGTGTAGTCTCACACTGTGCCAATCTAC
genomic: CCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGgttagttctt ... tttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGT-GTCTCACACTGTGCCAATCTAC
EST: gi|47829310|gb|CK118994.1|CK118994
EST:     TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCG                         GTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
genomic: TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGgttagttctt ... tttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
EST: gi|125163692|gb|EL190462.1|EL190462
EST:     TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCG                         GTATTGTGCTCGATTC
genomic: TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGgttagttctt ... tttgtaacagGTATTGTGCTCGATTC
EST: gi|47828440|gb|CK118124.1|CK118124
EST:     TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCG                         GTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
genomic: TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGgttagttctt ... tttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
EST: gi|86067106|gb|DR362863.1|DR362863
EST:     TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCG                         GTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
genomic: TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGgttagttctt ... tttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
EST: gi|125320350|gb|EL334435.1|EL334435
EST:     TCTTTCTCTCTATGCCAGTGGTCGTACAACCG                         GTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACA
genomic: TCTTTCTCTCTATGCCAGTGGTCGTACAACCGgttagttctt ... tttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACA
EST: gi|116461010|gb|EG503602.1|EG503602
EST:     TGTTGCCATTCAGGCCGTTCCTTCTCTCTATGCCAGTGGTCGTACAACCG                         GTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
genomic: TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGgttagttctt ... tttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
EST: gi|47829284|gb|CK118968.1|CK118968
EST:     TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCG                         GTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
genomic: TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGgttagttctt ... tttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
EST: gi|125191070|gb|EL206024.1|EL206024
EST:     CAGTGGTCGTACAACCG                         GTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
genomic: CAGTGGTCGTACAACCGgttagttctt ... tttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
EST: gi|47831502|gb|CK121186.1|CK121186
EST:     TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCG                         GTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG
genomic: TGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGgttagttctt ... tttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttatattatcttcttacttgtatttacttaaagtcgttctctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG
            ttcttac  putative branch site (score: 2)
                                   tcgttctctttttgt  putative PPT
                   ttgtatttacttaaa  TA-rich tract