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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatataaaaagcataagacttaagaatctaattatttacaccaaaactatcaaaatctggtgtgctttaattctttgtttctcttcagGAGCCTGGATGATGTTCGAATGAATCTTGAGGTTCTCAAATATTGTGCTACTGTCTTGTTCTTG

Basic information

species Arabidopsis thaliana
transcript AT5G07710.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G07710.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os10g26730.2 (Oryza sativa), 3'ss of exon 3
gtatataaaaagcataagact----taagaatctaattatttacaccaaaactatcaaaatc-tggtgtgctttaattcttt------gtttctcttcagGAGCCTGGATGATGTTCGAATGAATCTTGAGGTTCTCAAATATTGTGCTACTGTCTTGTTCTTG
 |    || |   ||    ||    |  |  | | | ||| ||  | | ||  |   || |  || |||  ||  | | |         ||| | | ||||||||| ||||||||| | ||||||||||| |||||||| ||||||||||| ||  | ||||||
attaggaatagttatctcccttttttttgggttttagtatatatcctacaatgaatgaagtaatgatgtttttcgaatttgctccacgatttgtttgcagGAGCCTTGATGATGTTAGGATGAATCTTGAAGTTCTCAAGTATTGTGCTACAGTTCTCTTCTTG

upper sequence: AT5G07710.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G134903_T01 (Zea mays), 3'ss of exon 3
gtatataaaaagcataagacttaagaatctaatt--atttacaccaaaactat-caaaatctggtgtgctt----taattcttt-----gtttctcttcagGAGCCTGGATGATGTTCGAATGAATCTTGAGGTTCTCAAATATTGTGCTACTGTCTTGTTCTTG
 || ||    ||  |    |||     | | |||  ||||   ||   || |  |   |   | ||  ||     ||||| | |      ||| | | |||||| || ||||||||| ||||||| ||||| ||||||||||| |||||||| ||  ||||| ||
ttacatgttgag-gtttcccttgcttgttttattttattttggcctgcacaaagctggactcgatgatctcccactaattttgttggcaatttatttacagGAGTCTTGATGATGTTAGAATGAACCTTGAAGTTCTCAAATACTGTGCTACAGTTCTGTTCCTG

upper sequence: AT5G07710.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA05G00890.1 (Glycine max), 3'ss of exon 3
gta-tataaaaagcataagacttaag-aatctaattatttacaccaaaactatcaaaatctggtgtgctttaattctttgtttctcttcagGAGCCTGGATGATGTTCGAATGAATCTTGAGGTTCTCAAATATTGTGCTACTGTCTTGTTCTTG
||| |||  |     ||| |   ||| ||| | ||   |||     ||  | ||    | || ||   |||  | ||  |  | |  |||||||| ||||||||||||| ||||||||||| || |||||||| ||||| || ||  | ||||||
gtactatttatttgctaacatgcaagcaattttatc--ttatgttgaatttctc----tttgctgatatttgctgctacggatat--tcagGAGCTTGGATGATGTTCGGATGAATCTTGAAGTCCTCAAATACTGTGCAACAGTTCTATTCTTG

upper sequence: AT5G07710.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA17G11030.1 (Glycine max), 3'ss of exon 3
gtatataaaaagcataagacttaagaatctaattatttacaccaaaactatcaaaatctggtgtgctttaattctttgtttc---tcttcagGAGCCTGGATGATGTTCGAATGAATCTTGAGGTTCTCAAATATTGTGCTACTGTCTTGTTCTTG
        |   |     | ||   |||  ||  |  |  | |  ||   |   | |    | | ||   |||   || | |   | ||||||||| ||||||||||||| |||||||| || || |||||||| ||||| || ||  | ||||||
------gtactactatttatttgttaatgcaagcacgtttatcttaa--gttggatttctctttcctgatatttgctgctacggatattcagGAGCTTGGATGATGTTCGGATGAATCTGGAAGTCCTCAAATACTGTGCAACAGTTCTATTCTTG

upper sequence: AT5G07710.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv17s0000g06510.t01 (Vitis vinifera), 3'ss of exon 3
--------gtatataaaaagcataagacttaagaatctaatt-atttacaccaaaactatcaaaatc--tggtgtgctttaattctttgtttctcttcagGAGCCTGGATGATGTTCGAATGAATCTTGAGGTTCTCAAATATTGTGCTACTGTCTTGTTCTTG
        ||       ||   |   ||||     | |  || ||| |  |||| | | |      |  |||  |  | |   ||    |   | | ||||||  | ||||||||  | |||||||| |||||||||||||||||||| || || |||||| ||
gataggaagtgacagggaaatttcttactttctcttgtctttgattgagcccaagattcttgcttccattggactaatctttctcgccatgattttgcagGAGTTTAGATGATGTCAGGATGAATCTGGAGGTTCTCAAATATTGTGCAACAGTTTTGTTCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttacaccaaaactatcaaaatctggtgtgctttaattctttgtttctcttcagGAGCCTGGATGATGTTCGAATGAATCTTGAGGTTCTCAAATATTGTGCTACTGTCTTGTTCTTG
                               ctttaat  putative branch site (score: 4)
                               ctttaattctttgttt  CT-rich tract
                                tttaattctttgttt  TA-rich tract