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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcaaagtcaaaattaataactcagttattatacactagctattgtgagtgactatattttctcatctcaagtttttatttgacagGAGGTTGCATTCAAAGTGGATTACAAGGTGGAAGCTATTGCTGGAAGAGAATTTGGCTCTGTTTTCCTTGGCAACGAGAATCTTGCTAAGCTTGTTGTTA

Basic information

species Arabidopsis thaliana
transcript AT5G07350.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G07350.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 3'ss of exon 3
--gtgcaaagtcaaaattaataa------ctcagttattatacactagctattgtgagtgactatattttctcatctcaagtttttatttgacagGAGGTTGCATTCAAAGTGGATTACAAGGTGGAAGCTATTGCTGGAAGAGAATTTGGCTCTGTTTTCCTTGGCAACGAGAATCTTGCTAAGCTTGTTGTTA---
  |  || ||| || ||   |         |  | |||   ||| |  || ||  ||  ||   |   |  |  ||   |   ||  ||  | |||| ||  | |||| ||| ||||| |  ||   | | ||   |||||||||||||||||| |||||||||||| || | ||| || |   ||| ||||||    
gtgcccatagttaacatgtttcggttttttttggctatataacattctcttttaagacagatgttgcatcttactcaatataattctttaaatagGAAGTCACTTTCAGAGTTGATTATACTGTACCATCCAT---TGGAAGAGAATTTGGCTCCGTTTTCCTTGGCGACAAAAATGTTTCGGTGCTGGTTGTTTCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacactagctattgtgagtgactatattttctcatctcaagtttttatttgacagGAGGTTGCATTCAAAGTGGATTACAAGGTGGAAGCTATTGCTGGAAGAGAATTTGGCTCTGTTTTCCTTGGCAACGAGAATCTTGCTAAGCTTGTTGTTA
                                         tttttattt  CT-rich tract
                                    tcaagtttttattt  TA-rich tract