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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgttgcactatccataatcaaacacagatgtcgaaacatggtttcattttttttattactacttagatagagagcttatgtttttgtaactgcagTTGCCTGAAAGCATCTACAAGAATTTGGAAAAGACGACTCAAATGTTTAGGTTTACACTGCCTTTTCCAATGCTCGCATACCCTTTCTACTTG

Basic information

species Arabidopsis thaliana
transcript AT5G05580.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124944483|gb|EL020579.1|EL020579
EST:     CTCACCACCAGAACCATGGTCATGTCGAGAATGACGAATCATGGCATCCT                         TTGCCTGAAAGCATCTACAAGAATTTGGAAAAGACGACTCAAA
genomic: CTCACCACCAGAACCATGGTCATGTCGAGAATGACGAATCATGGCATCCTgtaagatgtt ... gtaactgcagTTGCCTGAAAGCATCTACAAGAATTTGGAAAAGACGACTCAAA
EST: gi|124863033|gb|EH947470.1|EH947470
EST:     CTCACCACCAGAACCATGGTCATGTCGAGAATGACGAATCATGGCATCCT                         TTGCCTGAAAG
genomic: CTCACCACCAGAACCATGGTCATGTCGAGAATGACGAATCATGGCATCCTgtaagatgtt ... gtaactgcagTTGCCTGAAAG
EST: gi|125048387|gb|EL120656.1|EL120656
EST:     TGGTCATGTCGAGAATGACGAATCATGGCATCCT                         TTGCCTGAAAGCATCTACAAGAATTTGGAAAAGACGACTCAAATGTTTTAG
genomic: TGGTCATGTCGAGAATGACGAATCATGGCATCCTgtaagatgtt ... gtaactgcagTTGCCTGAAAGCATCTACAAGAATTTGGAAAAGACGACTCAAATGTTT-AG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcattttttttattactacttagatagagagcttatgtttttgtaactgcagTTGCCTGAAAGCATCTACAAGAATTTGGAAAAGACGACTCAAATGTTTAGGTTTACACTGCCTTTTCCAATGCTCGCATACCCTTTCTACTTG
                                           ttgtaac  putative branch site (score: 2)
                                        tttttgt  CT-rich tract
     attttttttattacta  TA-rich tract