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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttagattgaaacacattatcttcttggttgcgtaatgcaattagtttagtaaatagtattttcataactaatgttgttggcagtgcagAGGCTAGTTCGAATGACTCTTACGCATGATGAGTACCCATTAGACTATTTGTTCCCATCTAACGCTGAG

Basic information

species Arabidopsis thaliana
transcript AT5G05540.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878469|gb|AU239300.1|AU239300
EST:     ATGTTTTTGAGAAATTCAAAAAGAAATCTTTGGATGAGACAGCTGAGCAG                         AGGCTAGTTCGAATGACTCTTACGCATGATGAGTACCCATTAGACTATTTG
genomic: ATGTTTTTGAGAAATTCAAAAAGAAATCTTTGGATGAGACAGCTGAGCAGgtttagattg ... ggcagtgcagAGGCTAGTTCGAATGACTCTTACGCATGATGAGTACCCATTAGACTATTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgcaattagtttagtaaatagtattttcataactaatgttgttggcagtgcagAGGCTAGTTCGAATGACTCTTACGCATGATGAGTACCCATTAGACTATTTGTTCCCATCTAACGCTGAG
                                aactaat  putative branch site (score: 2)
     aattagtttagtaaat  TA-rich tract