1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtggctgaaattatctttttgcttatgatgtcaaactatctttgattgctaactactctctcactcgctgcagTCTACAAGCGCGTCTGGTGGATTACCAAGTGAATTGCAGCTTGGTCTACTGTCTCCTCTATATTTGAGGAAACTCTTTGAACGCATGGGAGCTACTTACA
species | Arabidopsis thaliana |
transcript | AT5G05200.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCAAGCCTTTGTAGGGGTTGGAGGAGAGTGGCTAAATGATTTATCTAAG TCTACAAGCGCGTCTGGCGGATTACCAAGEST: gi|125154371|gb|EL185025.1|EL185025
genomic: TTCAAGCCTTTGTAGGGGTTGGAGGAGAGTGGCTAAATGATTTATCTAAGgtggctgaaa ... ctcgctgcagTCTACAAGCGCGTCTGGTGGATTACCAAG
EST: TCAAGCCTTTGTAGGGGTTGGAGGAGAGTGGACTAAATGATTTATCTAAG TCTACAAGCGCGTCTGGTGGATTACCAAGEST: gi|164048150|gb|ES104028.1|ES104028
genomic: TCAAGCCTTTGTAGGGGTTGGAGGAGAGTGG-CTAAATGATTTATCTAAGgtggctgaaa ... ctcgctgcagTCTACAAGCGCGTCTGGTGGATTACCAAG
EST: TTCAAGCCTTTGTAGGGGTTGGAGGAGAGTGGCTAAATGATTTATCTAAG TCTACGAGCGCGTCTGGTGGATTACCAAGTGAATTGCAGCTTGGTCTACTGEST: gi|47832248|gb|CK121932.1|CK121932
genomic: TTCAAGCCTTTGTAGGGGTTGGAGGAGAGTGGCTAAATGATTTATCTAAGgtggctgaaa ... ctcgctgcagTCTACAAGCGCGTCTGGTGGATTACCAAGTGAATTGCAGCTTGGTCTACTG
EST: TTCAAGCCTTTGTAGGGGTTGGAGGAGAGTGGCTAAATGATTTATCTAAG TCTACAAGCGCGTCTGGTGGATTACCAAGTGAATTGCAGCTTGGTCTACTG
genomic: TTCAAGCCTTTGTAGGGGTTGGAGGAGAGTGGCTAAATGATTTATCTAAGgtggctgaaa ... ctcgctgcagTCTACAAGCGCGTCTGGTGGATTACCAAGTGAATTGCAGCTTGGTCTACTG
ttgcttatgatgtcaaactatctttgattgctaactactctctcactcgctgcagTCTACAAGCGCGTCTGGTGGATTACCAAGTGAATTGCAGCTTGGTCTACTGTCTCCTCTATATTTGAGGAAACTCTTTGAACGCATGGGAGCTACTTACA
ctactctctcactc CT-rich tract
aaactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggctgaaattatctttttgcttatgatgtcaaactatctttgattgctaactactctctcactcgctgcagTCTACAAGCGCGTCTGGTGGATTACCAAGTGAATTGCAGCTTGGTCTACTGTCTCCTCTATATTTGAGGAAACTCTTTGAACGCATGGGAGCTACTTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT