1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagggattctatatcctgttttggttttttgttctatcttatcgatgtgaaaaaactttagcttttcttgatttgtagcgtttttactatcagaatcagatgtaaacttgccttgttttcggcttatgaatcatatgtgtgtggcagATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCAACTGAAGGATCCATTAAGCAGACCAAATTTTCTATAACGAAACG
species | Arabidopsis thaliana |
transcript | AT5G04740.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTACAACTCAGTTTTGGAAATCGTCTTGGGGCTCTTATTGACACA ATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCAEST: gi|125163800|gb|EL190570.1|EL190570
genomic: GTACAACTCAGTTTTGGAAATCGTCTTGGGGCTCTTATTGACACAgtgagggatt ... tgtgtggcagATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCA
EST: TGGAAATCGTCTTGGGGCTCTTATTGACACA ATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCAEST: gi|125213498|gb|EL228330.1|EL228330
genomic: TGGAAATCGTCTTGGGGCTCTTATTGACACAgtgagggatt ... tgtgtggcagATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCA
EST: CAACTCAGTTTTGGAAATCGTCTTGGGGCTCTTATTGACACA ATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCA
genomic: CAACTCAGTTTTGGAAATCGTCTTGGGGCTCTTATTGACACAgtgagggatt ... tgtgtggcagATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCA
gaatcagatgtaaacttgccttgttttcggcttatgaatcatatgtgtgtggcagATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCAACTGAAGGATCCATTAAGCAGACCAAATTTTCTATAACGAAACG
ttatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagggattctatatcctgttttggttttttgttctatcttatcgatgtgaaaaaactttagcttttcttgatttgtagcgtttttactatcagaatcagatgtaaacttgccttgttttcggcttatgaatcatatgtgtgtggcagATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCAACTGAAGGATCCATTAAGCAGACCAAATTTTCTATAACGAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG