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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatacattgattgatactttattttgtttgctcttgtttgatacgatgtgctctttcttaactctttgaatttgtattcgtcttaacagACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAG

Basic information

species Arabidopsis thaliana
transcript AT5G04600.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86067155|gb|DR362912.1|DR362912
EST:     TCTCGCAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAACAAAAAG                         ACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAG
genomic: TCTCGCAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAACAAAAAGgttatacatt ... gtcttaacagACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAG
EST: gi|86067156|gb|DR362913.1|DR362913
EST:     TCTCGCAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAACAAAAAG                         ACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAG
genomic: TCTCGCAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAACAAAAAGgttatacatt ... gtcttaacagACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAG
EST: gi|86074844|gb|DR370601.1|DR370601
EST:     TCTCGCAGTTTGGWACAGTTAAGAGAGTTAGAGTCGCCAGAWACAAAAAG                         ACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAG
genomic: TCTCGCAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAACAAAAAGgttatacatt ... gtcttaacagACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAG
EST: gi|86067154|gb|DR362911.1|DR362911
EST:     TCTCGCAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAACAAAAAG                         ACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAG
genomic: TCTCGCAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAACAAAAAGgttatacatt ... gtcttaacagACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgatacgatgtgctctttcttaactctttgaatttgtattcgtcttaacagACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAG
                     tcttaac  putative branch site (score: 2)
                                          ttcgtctt  putative PPT
                              tttgaatttgtatt  TA-rich tract