1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattgttactaaaacccttttgaaaattgcgtcactttcagaactttatagcatggcttaatcaataaaatcttatcgtcgttgtgtactgatagGGAGATGGTGCATGGTTTTGTGGGCTTCACGTAGACAGTGGTCGTGTTGGAGGTATAATGAAGAAGACGCTGAGAGAAGTAATAGAGAAATACAAAATTG
species | Arabidopsis thaliana |
transcript | AT5G04590.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGGGATGGCATGAACAG GGAGATGGTGCATGGTTTTGTGGGCTTCACGTAGACAGTGGTCGTGTTGGAEST: gi|86060691|gb|DR356448.1|DR356448
genomic: CTTGGGATGGCATGAACAGgtattgttac ... gtactgatagGGAGATGGTGCATGGTTTTGTGGGCTTCACGTAGACAGTGGTCGTGTTGGA
EST: GTGAACTTCCAGAGTGGGAGTTCAAGAGTTACTTGGGATGGCATGAACAG GGAGATGGTGCATGGTTTTGTGGGCTTCACGTAGACAGTGGTCGTGTTGGAEST: gi|86060690|gb|DR356447.1|DR356447
genomic: GTGAACTTCCAGAGTGGGAGTTCAAGAGTTACTTGGGATGGCATGAACAGgtattgttac ... gtactgatagGGAGATGGTGCATGGTTTTGTGGGCTTCACGTAGACAGTGGTCGTGTTGGA
EST: GTGAACTTCCAGAGTGGGAGTTCAAGAGTTACTTGGGATGGCATGAACAG GGAGATGGTGCATGGTTTTGTGGGCTTCACGTAGACAGTGGTCGTGTTGGAEST: gi|164043839|gb|ES187374.1|ES187374
genomic: GTGAACTTCCAGAGTGGGAGTTCAAGAGTTACTTGGGATGGCATGAACAGgtattgttac ... gtactgatagGGAGATGGTGCATGGTTTTGTGGGCTTCACGTAGACAGTGGTCGTGTTGGA
EST: GTGAACTTCCAGAGTGGGAGTTCAAGAGTTACTTGGGATGGCATGAACAG GGAGATGGTGCATGGT
genomic: GTGAACTTCCAGAGTGGGAGTTCAAGAGTTACTTGGGATGGCATGAACAGgtattgttac ... gtactgatagGGAGATGGTGCATGGT
gaactttatagcatggcttaatcaataaaatcttatcgtcgttgtgtactgatagGGAGATGGTGCATGGTTTTGTGGGCTTCACGTAGACAGTGGTCGTGTTGGAGGTATAATGAAGAAGACGCTGAGAGAAGTAATAGAGAAATACAAAATTG
gcttaat putative branch site (score: 4)
ttaatcaataaaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgttactaaaacccttttgaaaattgcgtcactttcagaactttatagcatggcttaatcaataaaatcttatcgtcgttgtgtactgatagGGAGATGGTGCATGGTTTTGTGGGCTTCACGTAGACAGTGGTCGTGTTGGAGGTATAATGAAGAAGACGCTGAGAGAAGTAATAGAGAAATACAAAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT