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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgatcgctgaatcttgggagattgattcattcaatgttgtcggaatttgacataacatcatggttcctttttttgtgcagAAAGGTCGGCTATCGGAGGATGAAGCTCGGTTCTACACTGCAGAAGTTGTGGATGCTCTTGAGTATATACATAGTATGGGACTGATTCATCGAGATATTA

Basic information

species Arabidopsis thaliana
transcript AT5G04510.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G04510.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA20G33140.1 (Glycine max), 3'ss of exon 3
--------gtaagatgatcgctgaatcttgggagattgattcattcaatg-ttgtcggaatttgacat--aacatcatggttcc---tttttttgtgcagAAAGGTCGGCTATCGGAGGATGAAGCTCGGTTCTACACTGCAGAAGTTGTGGATGCTCTTGAGTATATACATAGTATGGGACTGATTCATCGAGATATTA
         || |      | | | |  |  |  | | | |   |  ||| ||||       ||| ||  |  | || | || |   ||| | ||||||||||||||| ||||| |||||||| || || |||||  | || |||||||| |||||||| || || ||||||| | ||||| | || ||||| |||||||
tttttggaatatggaagctgttaatttgtaagctagtaactttctgcatgcttgttactgcatgatatctactagcaagatttctgatttctatgtgcagAAAGGTCGTCTATCAGAGGATGAGGCACGATTCTATGCAGCTGAAGTTGTTGATGCTCTCGAATACATACATAATTTGGGAGTCATACATCGTGATATTA

upper sequence: AT5G04510.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA10G34430.1 (Glycine max), 3'ss of exon 3
--------gtaagatgatcgctgaatcttgggagattgattcattcaatg-ttgtcggaatttgacat-----aacatcatggttcctttttttgtgcagAAAGGTCGGCTATCGGAGGATGAAGCTCGGTTCTACACTGCAGAAGTTGTGGATGCTCTTGAGTATATACATAGTATGGGACTGATTCATCGAGATATTA
         || |    | | | | |  |  |  | | | |   |  ||| ||||       ||| ||     | || | |   |  ||| | ||||||||||||||| ||||| ||| |||| || || |||||  | || |||||| | ||||||||||| || ||||||| | ||||| | || ||||| |||||||
tttttgggatatggaagttgttaatttgtaagctagtaactttctgcatgcttgttactgcatgatatctactagcaacctttctgatttctatgtgcagAAAGGTCGTCTATCAGAGAATGAGGCACGATTCTATGCAGCTGAAGTTATCGATGCTCTTGAATACATACATAATTTGGGAGTCATACATCGTGATATTA

upper sequence: AT5G04510.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv13s0074g00100.t01 (Vitis vinifera), 3'ss of exon 4
---------gtaagatgatcgctgaatcttgggag-attgattcattcaatgttgtcggaatttgacataacatcat--ggttcctttttttg--tgcagAAAGGTCGGCTATCGGAGGATGAAGCTCGGTTCTACACTGCAGAAGTTGTGGATGCTCTTGAGTATATACATAGTATGGGACTGATTCATCGAGATATTA
          |||  |  || |||  |||||   |   ||  |||| |       |   | ||||  ||   | |||   ||   ||| | ||  |||||||||||||  | || ||| |||||||||| |||||  | || |||||||| ||||||||||| ||||| |||||| | ||| |||| || || |||||||
ttcttgatcttaaatttgtctctgcttcttgtatgtggtgcatcatgcctacaactgcaagtttgctattgtaacatccagtgaatttgtgtgagtgcagAAAGGTCGTTTGTCAGAGAATGAAGCTCGCTTCTATGCAGCTGAAGTTGTAGATGCTCTTGAATATATTCATAGTCTAGGATTGATACACCGGGATATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattcaatgttgtcggaatttgacataacatcatggttcctttttttgtgcagAAAGGTCGGCTATCGGAGGATGAAGCTCGGTTCTACACTGCAGAAGTTGTGGATGCTCTTGAGTATATACATAGTATGGGACTGATTCATCGAGATATTA
                        acataac  putative branch site (score: 3)
                                      ttcctttttttgtgc  putative PPT
                                          tttttttgt  TA-rich tract