Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgtgaaaagtggtgttattgattagaaaaaaataggttactgatagttgaatgttccaaagaaaaaaagtattttatatcttctatttggtgcatgcagGTACTGGCTGACATAATTGATTTACCCTGTCGAATTGCCAAAGGATGTAAATATTGTAATAGAGACGATGCCGCTTCGTGCCTTGTCAGGTTTGGGCTTG

Basic information

species Arabidopsis thaliana
transcript AT5G03730.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G03730.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA03G34890.1 (Glycine max), 3'ss of exon 4
---------------------------------------------------------------------atgtgaaaagtggtgttattgattagaaaaaaataggttactgatagttgaatgttccaaagaaaaaaagt-attttatatcttctatttggtgcatgcagGTACTGGCTGACATAATTGATTTACCCTGTCGAATTGCCAAAGGATGTAAATATTGTAATAGAGACGATGCCGCTTCGTGCCTTGTCAGGTTTGGGCTTG
                                                                      |      ||||||| |  ||     |    | | | ||| |   || | |    |             || ||   ||   || |   || |  || |||||||| |||||||  |||||||| || ||||||||||| || || ||||||||||||   ||||| |||||| | || || |||||  | ||||| ||||
gtaatacttgaattctatgtgatggtcaaggctgtgattatgcattttgactatattattattatctttttaatgggagtggtggtggtggaggaatttcagtggtttaatacaagataaggtctttgtgttgtttttgtgatgacatgctttattcatgatatattcagGTACTAGCTGACACCATTGATTTGCCTTGTCGAATTGCTAAGGGCTGTAAATATTGTTCAAGAGATGATGCCTCCTCATGTCTTGTTCGATTTGGACTTG

upper sequence: AT5G03730.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA10G07610.1 (Glycine max), 3'ss of exon 4
----------------------atgtgaaaagtggtgttattgattagaaaaaaataggttactgatagttgaatgt-tccaa----agaaaaaaagtattttatat-------cttctatttggtgcatgcagGTACTGGCTGACATAATTGATTTACCCTGTCGAATTGCCAAAGGATGTAAATATTGTAATAGAGACGATGCCGCTTCGTGCCTTGTCAGGTTTGGGCTTG
                       | |  || |   || |  ||  |   ||    |   |   || ||||| | |   | |||    |   ||   || ||||| ||        || ||||   |   | |||||||| ||||||   ||||||||||| ||||||||||| || || ||||||||||| || || || |||||  | || || |||||  | |||||| |||
gtaaggctctactttcctttggctttttaaggctatgattatgcatgttaacttgtttttgtttgctagtttagtacatgcaattgtatttaagttgttttttaaatgacttgctttatattcaatattttcagGTACTAGCTGACGCCATTGATTTACCATGTCGAATTGCTAAGGGCTGTAAATATTGCAAAAGGGATGATGCTTCATCTTGTCTTGTTCGATTTGGGATTG

upper sequence: AT5G03730.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA13G21480.1 (Glycine max), 3'ss of exon 3
----------------------atgtgaaaagtggtgttattgattagaaaaaaataggttactgatagttgaatgt-tccaa----agaaaaaaagtattttatat-------cttctatttggtgcatgcagGTACTGGCTGACATAATTGATTTACCCTGTCGAATTGCCAAAGGATGTAAATATTGTAATAGAGACGATGCCGCTTCGTGCCTTGTCAGGTTTGGGCTTG
                         |  || |   || |  ||  |    |    |   |   || | | | | |   | |||    | | ||   || ||||| ||        || ||||   |   | |||||||| ||||||   ||||||||||| ||||||||||| || || ||||||||||| || || || |||||  | || || |||||  | ||||||||||
gtaaggctctacttttctttggccttttaaggctatgattatgcatgttgacttgtttttgtttgctggcttagtacatgcaattgtatataagttgttttttaaatgacttgctttatattcaatattttcagGTACTAGCTGACGCCATTGATTTACCATGTCGAATTGCTAAGGGCTGTAAATATTGCAAAAGGGATGATGCTACATCTTGTCTTGTTCGATTTGGGCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116475867|gb|EG518459.1|EG518459
EST:     TAGGTAGCCTCTCTGTTGGACTCTGCAGACATCGAGCTTTACTCTTCAAA                         GTACTGGCTGACATAATTGATTTACCCTGTCGAATTGCCAAAGGATGTAAA
genomic: TAGGTAGCCTCTCTGTTGGACTCTGCAGACATCGAGCTTTACTCTTCAAAgtgagatccc ... gtgcatgcagGTACTGGCTGACATAATTGATTTACCCTGTCGAATTGCCAAAGGATGTAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgaatgttccaaagaaaaaaagtattttatatcttctatttggtgcatgcagGTACTGGCTGACATAATTGATTTACCCTGTCGAATTGCCAAAGGATGTAAATATTGTAATAGAGACGATGCCGCTTCGTGCCTTGTCAGGTTTGGGCTTG
             aaagaaaaaaagtatt  TA-rich tract