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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgttggccttgtcatgtgtttctcaattgtgtgtagttgaaagataagtgagatttttgtttttgttggtaatggttatggtggtttttaatatcggtttattatgtgaatctttagGGGAACTTGCCAACCGTATTGTCGATCTCTTCCCGATGATCCATTCCTTGAATGTTTTGAGTTTTCTGATAAGACTAACATTCAAG

Basic information

species Arabidopsis thaliana
transcript AT5G02080.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G02080.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv18s0001g04420.t01 (Vitis vinifera), 3'ss of exon 4
-----gtaacgttggccttgtcatgtgtttctcaattgtgtgtagttgaaagataagtgagatttttgtttttgttggtaatggttatggtggtttttaatatcggtttattatgtgaatctttagGGGAACTTGCCAACCGTATTGTCGATCTCTTCCCGATGATCCATTCCTTGAATGTTTTGAGTTTTCTGATAAGACTAACATTCAAG
      || | ||   ||     |   || |  || |     | ||  ||| | |||   | |  |||| ||| ||  || |  |     |   | || |      |  |     | | | | ||||||| | ||||| || |||||  |||  || || |||||||||||||||||||||||||||||  |  |  || | ||  ||||||
gtttcataccattt-tctaaatttaccttacagaagttaacatggtctaaa-agaagctcgttccttgtatttatt--tatttttctatctatatgttgagggtaataaacggcctta-tatgtagGGGATCCTGCCAGCCATATTGCAGATTCCTCCCTGATGATCCATTCCTTGAATGTTTTGAGTTCACCCAAGAGTCCAATGTTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttggtaatggttatggtggtttttaatatcggtttattatgtgaatctttagGGGAACTTGCCAACCGTATTGTCGATCTCTTCCCGATGATCCATTCCTTGAATGTTTTGAGTTTTCTGATAAGACTAACATTCAAG
                       ttttaat  putative branch site (score: 3)
                                                tcttt  putative PPT
                      tttttaatatcggttt  TA-rich tract