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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtcacacaatttcttgcatccttttggaaagaatggtgttgaattttgtagagtttgattgcacataatcttagtctgaatgttccagGTGATAAGGATTGTACCTTATAGCGCAGTCCAGTTGTTTGCATATGAAACATACAAG

Basic information

species Arabidopsis thaliana
transcript AT5G01500.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G01500.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv08s0007g02230.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------------------------gtacgtcacacaatttcttgcatccttttggaaagaatggtgttg-aattttgtagagt-ttgattgcacataat--cttagtctgaat-gttccagGTGATAAGGATTGTACCTTATAGCGCAGTCCAGTTGTTTGCATATGAAACATACAAG
                                          | |    |||  ||||       |||||   |||| || ||    |||| | ||  |  |||| || || |||    ||  | ||| | ||||||||||||| | ||  ||||||| || || |||||| ||||||| |||||||| ||||||
gtcctttgcatccttcactttctaaattgcatggataagcttttctcttcactgtttcagagtatctttttccaagattgttgggataattctttattgaattgaatgtacttaaggatttcttttgatttgttccagGTGATACGTATCATACCTTACAGTGCCGTCCAGCTGTTTGCTTATGAAACTTACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtgttgaattttgtagagtttgattgcacataatcttagtctgaatgttccagGTGATAAGGATTGTACCTTATAGCGCAGTCCAGTTGTTTGCATATGAAACATACAAG
                   gtttgat  putative branch site (score: 5)
     ttgaatttt  TA-rich tract