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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcaccatttagtttactcactggatgttctctatttggtaatatcgctaatttcttcttctcttctgtagCTTCCCTTGTCCTTATTACCAAAAGGTTCCACTCTCGCTTGCGCTTAGTCCAAGAATCATCTCTGAAATTGCACGGTTTAAGCCTGACATTATACACGCT

Basic information

species Arabidopsis thaliana
transcript AT5G01220.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116409173|gb|EG451765.1|EG451765
EST:     GAAGGTGTTCCTGAAGAGTTTTATGGAGCCAGAGTCATTGGATCAAGAAG                         CTTCCCTTGTCCTTATTACCAAAAGGTTCCACTCTCGCTTGCGCTTAGTCC
genomic: GAAGGTGTTCCTGAAGAGTTTTATGGAGCCAGAGTCATTGGATCAAGAAGgtagcaccat ... tcttctgtagCTTCCCTTGTCCTTATTACCAAAAGGTTCCACTCTCGCTTGCGCTTAGTCC
EST: gi|86057508|gb|DR353265.1|DR353265
EST:     GAAGGTGTTCCTGAAGAGTTTTATGGAGCCAGAGTCATTGGATCAAGAAG                         CTTCCCTTGTCCTTATTACCAAAAGGTTCCACTCTCGCTTGCGCTTAGTCC
genomic: GAAGGTGTTCCTGAAGAGTTTTATGGAGCCAGAGTCATTGGATCAAGAAGgtagcaccat ... tcttctgtagCTTCCCTTGTCCTTATTACCAAAAGGTTCCACTCTCGCTTGCGCTTAGTCC
EST: gi|116409166|gb|EG451758.1|EG451758
EST:     GAAGGTGTTCCTGAAGAGTTTTATGGAGCCAGAGTCATTGGATCAAGAAG                         CTTCCCTTGTCCTTATTACCAAAAGGTTCCACTCTCGCTTGCGCTTAGTCC
genomic: GAAGGTGTTCCTGAAGAGTTTTATGGAGCCAGAGTCATTGGATCAAGAAGgtagcaccat ... tcttctgtagCTTCCCTTGTCCTTATTACCAAAAGGTTCCACTCTCGCTTGCGCTTAGTCC
EST: gi|116409154|gb|EG451746.1|EG451746
EST:     GAAGGTGTTCCTGAAGAGTTTTATGGAGCCAGAGTCATTGGATCAAGAAG                         CTTCCCTTGTCCTTATTACCAAAAGGTTCCACTCTCGCTTGCGCTTAGTCC
genomic: GAAGGTGTTCCTGAAGAGTTTTATGGAGCCAGAGTCATTGGATCAAGAAGgtagcaccat ... tcttctgtagCTTCCCTTGTCCTTATTACCAAAAGGTTCCACTCTCGCTTGCGCTTAGTCC
EST: gi|116409155|gb|EG451747.1|EG451747
EST:     GAAGGTGTTCCTGAAGAGTTTTATGGAGCCAGAGTCATTGGATCAAGAAG                         CTTCCCTTGTCCTTATTACCAAAAGGTTCCACTCTCGCTTGCGCTTAGTCC
genomic: GAAGGTGTTCCTGAAGAGTTTTATGGAGCCAGAGTCATTGGATCAAGAAGgtagcaccat ... tcttctgtagCTTCCCTTGTCCTTATTACCAAAAGGTTCCACTCTCGCTTGCGCTTAGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcactggatgttctctatttggtaatatcgctaatttcttcttctcttctgtagCTTCCCTTGTCCTTATTACCAAAAGGTTCCACTCTCGCTTGCGCTTAGTCCAAGAATCATCTCTGAAATTGCACGGTTTAAGCCTGACATTATACACGCT
                            tcgctaatttcttctt  CT-rich tract
                                taatttctt  TA-rich tract