1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtttacataccctttcttttagactttgaatgaagctttttttttttttttttttttttgctgaagagtgtgtgtatttgtgtgttcaatttccagGATTTCTATTCTGTCCTTGGAGTCTCGAAAAATGCAACCAAAGCTGAGATTAAAAGCG
species | Arabidopsis thaliana |
transcript | AT4G39960.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAATACACATTCTCGTAGAGGAGCTCGCTTCACTAGTTAGAGCTGATACT GATTTCTATTCEST: gi|86057935|gb|DR353692.1|DR353692
genomic: TAATACACATTCTCGTAGAGGAGCTCGCTTCACT-GTTAGAGCTGATACTgtatgtttac ... caatttccagGATTTCTATTC
EST: CTAATACA--TTCTCGTAGAGGAGCTCGCTTCACTGTTAGAGCTGATACT GATTTCTATTCTGTCCTTGGAGTCTCGAAAAATGCAACCAAAGCTGAGATT
genomic: CTAATACACATTCTCGTAGAGGAGCTCGCTTCACTGTTAGAGCTGATACTgtatgtttac ... caatttccagGATTTCTATTCTGTCCTTGGAGTCTCGAAAAATGCAACCAAAGCTGAGATT
ttttttttttttttttttgctgaagagtgtgtgtatttgtgtgttcaatttccagGATTTCTATTCTGTCCTTGGAGTCTCGAAAAATGCAACCAAAGCTGAGATTAAAAGCG
tttcc CT-rich tract
tttttttttttttgct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttacataccctttcttttagactttgaatgaagctttttttttttttttttttttttgctgaagagtgtgtgtatttgtgtgttcaatttccagGATTTCTATTCTGTCCTTGGAGTCTCGAAAAATGCAACCAAAGCTGAGATTAAAAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA