1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtccacctttgtttctctctttgattcaccttcttttttgtgttcttatgtgttcaatcaatactttgtgttgcagATAGGCAAACGTTTCTGAATACCTCGAAATGGATTGAGGATGTTCACAGAGAAAGAGGTCAAAGCAATGTTATCATCGTTCTTGTTGGAAACAAAACTGA
species | Arabidopsis thaliana |
transcript | AT4G39890.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGCGATTGTTGTATACGATGTATCCA ATAGGCAAACGTTTCTGAATACCTCGAAATGGATTGAGGATGTTCEST: gi|116437617|gb|EG480209.1|EG480209
genomic: TTGCCATTGTTGTATACGATGTATCCAgtaagtccac ... tgtgttgcagATAGGCAAACGTTTCTGAATACCTCGAAATGGATTGAGGATGTTC
EST: AAGTTACATCAGAGATTCTTCTGTTGCCATTGTTGTATACGATGTATCCA ATAGGCAAACGTTTCTGAATACCTCGAAATGGATTGAGGATGTTCACAGAG
genomic: AAGTTACATCAGAGATTCTTCTGTTGCCATTGTTGTATACGATGTATCCAgtaagtccac ... tgtgttgcagATAGGCAAACGTTTCTGAATACCTCGAAATGGATTGAGGATGTTCACAGAG
tgattcaccttcttttttgtgttcttatgtgttcaatcaatactttgtgttgcagATAGGCAAACGTTTCTGAATACCTCGAAATGGATTGAGGATGTTCACAGAGAAAGAGGTCAAAGCAATGTTATCATCGTTCTTGTTGGAAACAAAACTGA
ctttgat putative branch site (score: 5)
ttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtccacctttgtttctctctttgattcaccttcttttttgtgttcttatgtgttcaatcaatactttgtgttgcagATAGGCAAACGTTTCTGAATACCTCGAAATGGATTGAGGATGTTCACAGAGAAAGAGGTCAAAGCAATGTTATCATCGTTCTTGTTGGAAACAAAACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA