1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttttccccagagactttcatttaatgaattgattcctcttcaaagttgagatattttctttagcattgatttttgcctctcaagccgagtctttcatctttagcctcgttttagacccatcagaataaaattctctgcaaagtagttctctgccatagactgcttgtaaattttggttgccaattctgttattgtgcagGGGGAAATCCATCACGTAGTAAATCCAGATCCATACCGTGGAGTTTTTGGCTCTGATGGTTCTCTTTATGCTAAAGATGTTCATGACCACATCGAGTATG
species | Arabidopsis thaliana |
transcript | AT4G39660.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATACTATTGGACTAACTGCTCTTAACACATGGAAGTACCCATTACCTCAG GGGGAAATCCATCACGTAGTAAATCCAGATCCATACCGTGGAGTTTTTGGCEST: gi|124729076|gb|EH820478.1|EH820478
genomic: ATACTATTGGACTAACTGCTCTTAACACATGGAAGTACCCATTACCTCAGgttttcccca ... tattgtgcagGGGGAAATCCATCACGTAGTAAATCCAGATCCATACCGTGGAGTTTTTGGC
EST: AAGTACTCATTACCTCAG GGGGAAATCCATCTACGTAGTAAATCCAGATCCATACCGTGGAGTTTTTGGEST: gi|164191964|gb|EL984595.1|EL984595
genomic: AAGTACCCATTACCTCAGgttttcccca ... tattgtgcagGGGGAAATCCATC-ACGTAGTAAATCCAGATCCATACCGTGGAGTTTTTGG
EST: CACATGGAAGTACCCATTACCTCAGG GGGGAAATCCATCACGTAGTAAATCCAGATCCATACCGTGGAGTTTT-GG
genomic: CACATGGAAGTACCCATTACCTCA-Ggttttcccca ... tattgtgcagGGGGAAATCCATCACGTAGTAAATCCAGATCCATACCGTGGAGTTTTTGG
gttctctgccatagactgcttgtaaattttggttgccaattctgttattgtgcagGGGGAAATCCATCACGTAGTAAATCCAGATCCATACCGTGGAGTTTTTGGCTCTGATGGTTCTCTTTATGCTAAAGATGTTCATGACCACATCGAGTATG
ttctgtt CT-rich tract
ttgtaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttccccagagactttcatttaatgaattgattcctcttcaaagttgagatattttctttagcattgatttttgcctctcaagccgagtctttcatctttagcctcgttttagacccatcagaataaaattctctgcaaagtagttctctgccatagactgcttgtaaattttggttgccaattctgttattgtgcagGGGGAAATCCATCACGTAGTAAATCCAGATCCATACCGTGGAGTTTTTGGCTCTGATGGTTCTCTTTATGCTAAAGATGTTCATGACCACATCGAGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG