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...tttcctggatagatgaacataaatcttggaattagaactgtattttggctgatactcaattttctgaaggtacatactgtgatacacaatgttttctcagGTTGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTATCACATATCGTGGAGCTAAAATCCAG
species | Arabidopsis thaliana |
transcript | AT4G39520.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATCTACGCTATTAAACAAGCTGACTGGGACATTTTCCGAG GTTGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTATCACAEST: gi|164026819|gb|ES005055.1|ES005055
genomic: AATCTACGCTATTAAACAAGCTGACTGGGACATTTTCCGAGgtttgtagtt ... gttttctcagGTTGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTATCACA
EST: AATCTACGCTATTAAACAAGCTGACTGGGACATTTTCCGAG GTTGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTATCACAEST: gi|164105952|gb|ES164725.1|ES164725
genomic: AATCTACGCTATTAAACAAGCTGACTGGGACATTTTCCGAGgtttgtagtt ... gttttctcagGTTGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTATCACA
EST: AAATCTACGCTATTAAACAAGCTGACTGGGACATTTTCCGAG GTTGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTATCACAEST: gi|164038623|gb|ES206082.1|ES206082
genomic: AAATCTACGCTATTAAACAAGCTGACTGGGACATTTTCCGAGgtttgtagtt ... gttttctcagGTTGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTATCACA
EST: AAATCTACGCTATTAAACAAGCTGACTGGGACATTTTCCGAG GTTGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTAATCAC
genomic: AAATCTACGCTATTAAACAAGCTGACTGGGACATTTTCCGAGgtttgtagtt ... gttttctcagGTTGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTA-TCAC
tggctgatactcaattttctgaaggtacatactgtgatacacaatgttttctcagGTTGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTATCACATATCGTGGAGCTAAAATCCAG
ggctgat putative branch site (score: 4)
tgttttctc putative PPT
tcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcctggatagatgaacataaatcttggaattagaactgtattttggctgatactcaattttctgaaggtacatactgtgatacacaatgttttctcagGTTGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTATCACATATCGTGGAGCTAAAATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - acataaa
- - - - - - - - - - - - - - - - - - - - -attttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - tactcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atacaca