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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgatttcaaagttccttacttattattttatatgcttatatatgtaaaattggagaacttgtgcaatgtttacaaccccaattctaacatctcttttcttttttcttttttcttttcatagCCTCAAATTGAAAGTGGTGACAAGA

Basic information

species Arabidopsis thaliana
transcript AT4G38930.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059107|gb|DR354864.1|DR354864
EST:     CTACCTTTGAGCAGACTTACCGGTGTTATCCCTCATCCTTTATTGATAAG                         CCTCAAATTGAAAGTGGTGACAAGA
genomic: CTACCTTTGAGCAGACTTACCGGTGTTATCCCTCATCCTTTATTGATAAGgtttgatttc ... cttttcatagCCTCAAATTGAAAGTGGTGACAAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttacaaccccaattctaacatctcttttcttttttcttttttcttttcatagCCTCAAATTGAAAGTGGTGACAAGA
               ttctaac  putative branch site (score: 1)
               ttctaacatctctttt  CT-rich tract
                           ttttcttttttctttt  TA-rich tract