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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtactgtattggcatctttttgagtggtatttcaccttttctctgactaaccttttcatcttttgccctgattgctccctcctagTGCTGTTTTGGCACATTTCTTGTTAGACGAAAAACTTAGGAAAATGGGAGTTTGGGGATGTGTTTGTTGCATTGTGGGCTCAGTTATGATCGTCATACAC

Basic information

species Arabidopsis thaliana
transcript AT4G38730.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877442|gb|AU238273.1|AU238273
EST:     GCACCTGCTGTACTAGTCACTCCTCTTGGCGCATTAANTATAATCATCAG                         NGCTGNTTTGGCCCATTCTCTTGTTAGACGAAAAACTTAGGAAAATGGGAG
genomic: GCACCTGCTGTACTAGTCACTCCTCTTGGCGCATTAAGTATAATCATCAGgtttgtactg ... tccctcctagTGCTGTTTTGGCACATT-TCTTGTTAGACGAAAAACTTAGGAAAATGGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaccttttctctgactaaccttttcatcttttgccctgattgctccctcctagTGCTGTTTTGGCACATTTCTTGTTAGACGAAAAACTTAGGAAAATGGGAGTTTGGGGATGTGTTTGTTGCATTGTGGGCTCAGTTATGATCGTCATACAC
                                         ttgctccctcct  CT-rich tract
                      ttttcat  TA-rich tract