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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgacctgctttctgttataatatggtactaatatctagttccgctcttaccccagtctcctccataatctgttcgtatgatggtagGTTTTGGAATATGCTTCTATCTGTCTGACTCGAATTGCTGAAGCATTTGCACCGTATCCCGAGAAATTAGATGAATTATGTAACCATGGCCTGGTGACGC

Basic information

species Arabidopsis thaliana
transcript AT4G38600.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G38600.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA04G00530.1 (Glycine max), 3'ss of exon 3
------gtaattgacctgctttctgttataatatggtactaatatctagttc-cgctcttaccccagtctcctcc--ataatctgttcgtatgatggtagGTTTTGGAATATGCTTCTATCTGTCTGACTCGAATTGCTGAAGCATTTGCACCGTATCCCGAGAAATTAGATGAATTATGTAACCATGGCCTGGTGACGC
        |   |  || |  | ||  |   |||||       || | || | |   |||||||  |  |  ||   ||| ||  |    ||  | ||||||  ||||| |||| ||| | ||| |||| ||||| ||||||||||||||| | | ||| || |||||||||||||| || || ||||| ||||| || |
cattgtccagaggctcttcactatgcgaaggtatgggggagggatgttgtacgcagccttacccttgcattttcataatattcaatgttaatttttgtagGTCCTGGAACATGCCTCTGTTTGTTTGACACGAATAGCTGAAGCATTTGCATCATCTCCAGACAAATTAGATGAATTGTGCAATCATGGACTGGTAACAC

upper sequence: AT4G38600.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv03s0038g02340.t01 (Vitis vinifera), 3'ss of exon 3
gtaattgacctgctttct-gttataatatggtactaata-------tctagttcc-gctcttacccca---gtctcctccataatctgt-tcgtatgatggt----agGTTTTGGAATATGCTTCTATCTGTCTGACTCGAATTGCTGAAGCATTTGCACCGTATCCCGAGAAATTAGATGAATTATGTAACCATGGCCTGGTGACGC
|||| |       ||| | ||| || || || ||| ||        | |||||   | |  | || ||   ||||  ||  |  ||| | | |  |  ||||    |||| || ||| |||||||| | ||  |||||||||||||||||||||||||  | | ||| || ||||| |||||| |||| || ||||| || ||    |
gtaagtttgtcattttgtagttctactacggaacttatgatcctgttatagtttttgtttcttcctcatgtgtcttttctttcttctttgttgatttttggtttctagGTGTTAGAACATGCTTCTGTTTGCTTGACTCGAATTGCTGAAGCATTTGCTTCATCTCCGGATAAATTGGATGAACTATGCAATCATGGACTAGTTGACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctagttccgctcttaccccagtctcctccataatctgttcgtatgatggtagGTTTTGGAATATGCTTCTATCTGTCTGACTCGAATTGCTGAAGCATTTGCACCGTATCCCGAGAAATTAGATGAATTATGTAACCATGGCCTGGTGACGC
            ctcttac  putative branch site (score: 3)
                                ataatct  TA-rich tract