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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacgtcctttatttgctatataccctatgggatcttatgagttatcatcatttgatcattcagtgattgcattgcctggtttctttttctatttgacacccttttgcttataccgcagAGTATAGAACTGTTTCTGGTGTTGCGGGACCTCTCGTCATCCTTGAAAAAGTCAAG

Basic information

species Arabidopsis thaliana
transcript AT4G38510.5
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G38510.5 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagacgtcctttatttgctatataccctatgggatcttatgagttatcatcatttgatcattcagtgattgcattgcctggtttctttttctatttgacacccttttgcttataccgcagAGTATAGAACTGTTTCTGGTGTTGCGGGACCTCTCGTCATCCTTGAAAAAGTCAAG
           ||| ||||   |||    | | ||| ||| |  |   |  | ||   |  || |  ||||    |||    | | ||  |  ||||   |||  ||| |        ||||||||| ||||||| |||||||| || || || || ||||||||||| |||||||||
---------attttctttgtagtattgtgtgttggagcttctt-gcagttgt-atggtaatataccctgat-aagttgataagctcctaatggtatt---cacaatttcgt-------gcagAGTATCGAACTGTGTCTGGTGTAGCCGGTCCACTTGTCATCCTTGAGAAAGTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86066801|gb|DR362558.1|DR362558
EST:     -G-TGCTGAAAACAACCTTGAAATGGAGGGTACCCTGGAGATCGGCATGG                         AGTATAGAACTGTTTCTGGTGTTGCGGGACCTCTCGTCATCCTTGAAAAAG
genomic: TGCTGCTGAAAACAACCTTGAAATGGAGGGTACCCTGGAGATCGGCATGGgtaagacgtc ... tataccgcagAGTATAGAACTGTTTCTGGTGTTGCGGGACCTCTCGTCATCCTTGAAAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattgcattgcctggtttctttttctatttgacacccttttgcttataccgcagAGTATAGAACTGTTTCTGGTGTTGCGGGACCTCTCGTCATCCTTGAAAAAGTCAAG
                           atttgac  putative branch site (score: 4)
                                   cccttttgctt  CT-rich tract
                tttctttttctattt  TA-rich tract