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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctagtgcttttttatttaattatcattaagctaaacatagaaactttttaagtagtttatgatttaacgtattactgacatttgagttttattttcttgttttctctatgtgtgataatgatttgatgatcttcttctcagTTTATCTGG

Basic information

species Arabidopsis thaliana
transcript AT4G37750.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164101465|gb|ES113874.1|ES113874
EST:     ATGGG-CAATAGTTTCAAGAAGGAAGGTCACAGTAGAAAAGG-AGACAAG                         TTTATCTGG
genomic: ATGGGACAATAGTTTCAAGAAGGAAGGTCACAGTAGAAAAGGAAGACAAGgtctagtgct ... ttcttctcagTTTATCTGG
EST: gi|164065022|gb|ES122160.1|ES122160
EST:     ATGGGACAATAGTTTCAAGAAGGAAGGTCACAGTAGAAAAGGAAGACAAG                         TTTATCTGG
genomic: ATGGGACAATAGTTTCAAGAAGGAAGGTCACAGTAGAAAAGGAAGACAAGgtctagtgct ... ttcttctcagTTTATCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttattttcttgttttctctatgtgtgataatgatttgatgatcttcttctcagTTTATCTGG
                                  atttgat  putative branch site (score: 5)
                                           tcttcttctc  putative PPT
                            ataatgattt  TA-rich tract