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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtttcgtccgaactggtcgactatttaacaattgagagttccaaattttgatgcttcttttcttttacagTGGATTCCTGAGTTGAAGCACTATGCTCCTGGTGTCCCAATTGTCCTTGTTGGAACCAAACTAG

Basic information

species Arabidopsis thaliana
transcript AT4G35950.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G35950.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA11G08380.1 (Glycine max), 3'ss of exon 4
-----------------------------------------------------------------------------------------------------------gtca-gtttcgtccgaactggtcgactatttaacaattgagagttccaaattttgatgcttcttttcttttacagTGGATTCCTGAGTTGAAGCACTATGCTCCTGGTGTCCCAATTGTCCTTGTTGGAACCAAACTAG
                                                                                                           || |  |||      ||    ||   ||| ||| || |    | |   || ||  |||  |  |||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||| | || ||||| || || || |
gtacttcgttgcaatttattgtggtcagagtgttttgggagaattcttatttcttttgagaatcatgaggtttctgtatggcctgtaacgaaggatgtatggatcatgttatattttaagaaaataattcatttatataaaaagtcgatgat---aaattgcatgtctggtttctttttcagTGGATTCCAGAGTTGAAGCATTATGCACCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTG

upper sequence: AT4G35950.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA01G36880.1 (Glycine max), 3'ss of exon 4
----------------------------------------------------------------------------------------------------------gtca-gtttcgtccgaactggtcgactatttaacaattgaga--gttccaaattttgatgcttcttttcttttacagTGGATTCCTGAGTTGAAGCACTATGCTCCTGGTGTCCCAATTGTCCTTGTTGGAACCAAACTAG
                                                                                                           ||| |||   |   ||       | |  || | ||   |    | |   || ||  |||  |  |||| ||| ||||||||||| ||||||||||| ||||||||||||||||| ||| | || ||||| || || || |
gtacttcgtggcaatttattgtggtcatagtgttttgggtgtatttcttcttatttattttgataattataaggtttctgtatggcctgtaatgaaggatgtatggatcatgttatatgttaagaaaataattcatttataaaaaaagtcgatgataaattgcatgtgtggtttcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164012034|gb|ES176193.1|ES176193
EST:     TTGCCTTCTCTCTCATTAGTAAGGCTAGTTATGAGAATGTTTCCAAGAAG                         TGGATTCCTGAG
genomic: TTGCCTTCTCTCTCATTAGTAAGGCTAGTTATGAGAATGTTTCCAAGAAGgtcagtttcg ... tcttttacagTGGATTCCTGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcgactatttaacaattgagagttccaaattttgatgcttcttttcttttacagTGGATTCCTGAGTTGAAGCACTATGCTCCTGGTGTCCCAATTGTCCTTGTTGGAACCAAACTAG
                              ttttgatgcttctttt  CT-rich tract
      tatttaacaattga  TA-rich tract