1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacagttttttattagcaatgtgttattggttccattatcagcaatgagatctcctctaatcatattcatctctcttctcactgatcagATGGGAGCTGTGGATTCAACTTTCGAAGAGCTCTCGAGTATTTTCGATACCGGTGGCTCAAAGGGGTTAACAGGAGATTTGGTTGATAAAATACCTAAAA
species | Arabidopsis thaliana |
transcript | AT4G35840.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATAGGTCCAGCAATGCTAAGTGCGGTTCAAAGTCAG ATGGGAGCTGTGGATTCAACTTTCGAAGAGCTCTCGAGTATTTTCGATACCEST: gi|86084376|gb|DR380135.1|DR380135
genomic: ATAGGTCCAGCAATGCTAAGTGCGGTTCAAAGTCAGgtacagtttt ... cactgatcagATGGGAGCTGTGGATTCAACTTTCGAAGAGCTCTCGAGTATTTTCGATACC
EST: TTGTGCGGGAACGAATAGGTCCAGCGATGCTAAGTGCGGTTCAAAGTCAG ATGGGAGCTGTGGATTCAACTTTCGAAGAGCTCTCGAGTATTTTCGATACCEST: gi|164067873|gb|ES122198.1|ES122198
genomic: TTGTGCGGGAACGAATAGGTCCAGCAATGCTAAGTGCGGTTCAAAGTCAGgtacagtttt ... cactgatcagATGGGAGCTGTGGATTCAACTTTCGAAGAGCTCTCGAGTATTTTCGATACC
EST: TTGTGCGGGAACGAATAGGTCCAGCGATGCTAAGTGCGGTTCAAAGTCAG ATGGGAGCTGTGGATTCAACTTTTCGAAGAGCTCTCGAGTA
genomic: TTGTGCGGGAACGAATAGGTCCAGCAATGCTAAGTGCGGTTCAAAGTCAGgtacagtttt ... cactgatcagATGGGAGCTGTGGATTCAACTTT-CGAAGAGCTCTCGAGTA
attatcagcaatgagatctcctctaatcatattcatctctcttctcactgatcagATGGGAGCTGTGGATTCAACTTTCGAAGAGCTCTCGAGTATTTTCGATACCGGTGGCTCAAAGGGGTTAACAGGAGATTTGGTTGATAAAATACCTAAAA
ttctcac putative branch site (score: 2)
ttcatctctcttctca CT-rich tract
taatcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagttttttattagcaatgtgttattggttccattatcagcaatgagatctcctctaatcatattcatctctcttctcactgatcagATGGGAGCTGTGGATTCAACTTTCGAAGAGCTCTCGAGTATTTTCGATACCGGTGGCTCAAAGGGGTTAACAGGAGATTTGGTTGATAAAATACCTAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT