Sequence
atgc intronic sequence ATGC exonic sequencegtaagaaagaaaacttatagttattatgtctatcttatcaatctctcagaaagtgatgattcattcacgcagtttcattttcatgttgcagTTTGTCCAACTACCTTGAAAAGAATATGCAGACAACACGGGATAACACGATGGCCTTCCCGGAAGATCAAGAAAGTGGGGCATTCATTAAAGAAACTCCA
Basic information
species | Arabidopsis thaliana |
transcript | AT4G35270.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G35270.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA02G48080.1 (Glycine max), 3'ss of exon 1
gtaagaaagaaaacttatagttattatgtctatcttatcaatctctcagaaagtgatgattcattcacgcagtttcattttcatgt-tgcagTTTGTCCAACTACCTTGAAAAGAATATGCAGACAACACGGGATAACACGATGGCCTTCCCGGAAGATCAAGAAAGTGGGGCATTCATTAAAGAAACTCCA
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----gtgagatattattaatttgatatgatccattaattaattgcattcctcatg-tagctc-ttaatgaa---tgaattgcatgcatgcagTGTGTCCCACAACTCTGAAAAGGATATGCAGACAACATGGCATAACGCGATGGCCTTCAAGGAAAATAAAGAAGGTGGGGCACTCTTTGAAGAAACTACA
upper sequence: AT4G35270.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA14G00470.1 (Glycine max), 3'ss of exon 2
gtaagaaagaaaacttatagttattatgtctatcttatcaatctctcagaaagtgatgattcattcacgcagtttcattttcatgt-tgcagTTTGTCCAACTACCTTGAAAAGAATATGCAGACAACACGGGATAACACGATGGCCTTCCCGGAAGATCAAGAAAGTGGGGCATTCATTAAAGAAACTCCA
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gtgagatatgatccat-taataattgcattc--tttgtctctctctactccagctcttgtttaatgaatgaat---gaatgcatgcatgcagTGTGTCCCACGACTCTGAAAAGGATATGCAGACAGCACGGCATAACGAGGTGGCCTTCAAGGAAAATCAAGAAGGTGGGCCACTCTTTGAAGAAACTTCA
upper sequence: AT4G35270.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv03s0038g03710.t01 (Vitis vinifera), 3'ss of exon 3
-------gtaagaaagaaaacttatagttattatgt--ctatcttatcaatctct---cagaaagtgatgattcattcacgcagtttcattttcatgttgcagTTTGTCCAACTACCTTGAAAAGAATATGCAGACAACACGGGATAACACGATGGCCTTCCCGGAAGATCAAGAAAGTGGGGCATTCATTAAAGAAACTCCA
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gcatctatccattaagattatcagttcttgctatgtggtgatgcaaataggctgtttccagctcactaccaattgcttacctggttt--gtttcg-gttgcagTGTGCCCCACTACCCTGAAAAGGATATGCAGGCAACATGGGATCACCCGTTGGCCTTCCCGGAAGATCAAGAAAGTTGGCCACTCATTAAGGAAACTCCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125016680|gb|EL088949.1|EL088949EST: TCGACAATACTTTGCAGGAAGCCTCAAAGATGCAGCCAAGAGCATTGGTG TTTGTCCAACTACCTTGAAA
genomic: TCGACAATACTTTGCAGGAAGCCTCAAAGATGCAGCCAAGAGCATTGGTGgtaagaaaga ... catgttgcagTTTGTCCAACTACCTTGAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcaatctctcagaaagtgatgattcattcacgcagtttcattttcatgttgcagTTTGTCCAACTACCTTGAAAAGAATATGCAGACAACACGGGATAACACGATGGCCTTCCCGGAAGATCAAGAAAGTGGGGCATTCATTAAAGAAACTCCA
tttcattttc CT-rich tract
tttcatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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gtaagaaagaaaacttatagttattatgtctatcttatcaatctctcagaaagtgatgattcattcacgcagtttcattttcatgttgcagTTTGTCCAACTACCTTGAAAAGAATATGCAGACAACACGGGATAACACGATGGCCTTCCCGGAAGATCAAGAAAGTGGGGCATTCATTAAAGAAACTCCA
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