1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaaaaaacatcctgtattgatattctctcgagctatacattagtggataaagaatagttctaaaatttatacatctgcgacattaaatacaaaaacagGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGCATCAGCAGGAAATGTTGGGAAAGACAAGATAGTATTGGAAAACAAAGCAAACCCAGTGGC
species | Arabidopsis thaliana |
transcript | AT4G35260.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAACACTGCTGCTGGTATTGCTGGAGGCACAGGGGTCATGCCTGGAG GAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGCATCEST: gi|163991855|gb|ES088470.1|ES088470
genomic: CAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCATGCCTGGAGgtaaaaaaac ... acaaaaacagGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGCATC
EST: TGCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCATGCCTGGAG GAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAEST: gi|125265566|gb|EL279651.1|EL279651
genomic: TGCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCATGCCTGGAGgtaaaaaaac ... acaaaaacagGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAA
EST: CAGGAGTCATGCCTGGAG GAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTEST: gi|125207271|gb|EL222225.1|EL222225
genomic: CAGGAGTCATGCCTGGAGgtaaaaaaac ... acaaaaacagGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGT
EST: CTGGTATTGCTGGAGGCACAGGAGTCATGCCTGGAG GAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGCATCAGCAGGAAEST: gi|124915223|gb|EH989097.1|EH989097
genomic: CTGGTATTGCTGGAGGCACAGGAGTCATGCCTGGAGgtaaaaaaac ... acaaaaacagGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGCATCAGCAGGAA
EST: TGCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCATGCCTGGAG GAAATGTTGGGGCTGACCATGTGGTATTCGAGCAAGGEST: gi|124730596|gb|EH821998.1|EH821998
genomic: TGCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCATGCCTGGAGgtaaaaaaac ... acaaaaacagGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGG
EST: TATTGCTGGAGGCACAGGAGTCATGCCTGGAG GAAATGTTGGGGCTGACCATGCGGTATTCGTGCAAGGTGCATCAGCAGGAAEST: gi|164143596|gb|ES121245.1|ES121245
genomic: TATTGCTGGAGGCACAGGAGTCATGCCTGGAGgtaaaaaaac ... acaaaaacagGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGCATCAGCAGGAA
EST: GCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCATGCCTGGAAG GAAATGTTGGGGCTGACCATGCGGTATTCGAEST: gi|125017873|gb|EL090142.1|EL090142
genomic: GCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCATGCCTGGA-Ggtaaaaaaac ... acaaaaacagGAAATGTTGGGGCTGACCATGCGGTATTCGA
EST: TGCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCATGCCTGGAG GAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGEST: gi|125072197|gb|EL136974.1|EL136974
genomic: TGCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCATGCCTGGAGgtaaaaaaac ... acaaaaacagGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGG
EST: TGCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCATGCCTGGAG GAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAEST: gi|124900278|gb|EH974896.1|EH974896
genomic: TGCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCATGCCTGGAGgtaaaaaaac ... acaaaaacagGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAA
EST: TGCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCATGCCTGGAG GAAATGTTGGGGCTGACCATGCGGTATTCGAGEST: gi|125055519|gb|EL125709.1|EL125709
genomic: TGCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCATGCCTGGAGgtaaaaaaac ... acaaaaacagGAAATGTTGGGGCTGACCATGCGGTATTCGAG
EST: AGGAGTCATGCCTGGAG GAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGCATCAGCAGGAA
genomic: AGGAGTCATGCCTGGAGgtaaaaaaac ... acaaaaacagGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGCATCAGCAGGAA
tggataaagaatagttctaaaatttatacatctgcgacattaaatacaaaaacagGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGCATCAGCAGGAAATGTTGGGAAAGACAAGATAGTATTGGAAAACAAAGCAAACCCAGTGGC
ttctaaa putative branch site (score: 2)
aaagaatagttctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaaaacatcctgtattgatattctctcgagctatacattagtggataaagaatagttctaaaatttatacatctgcgacattaaatacaaaaacagGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGCATCAGCAGGAAATGTTGGGAAAGACAAGATAGTATTGGAAAACAAAGCAAACCCAGTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA