Sequence
atgc intronic sequence ATGC exonic sequencegtggggttttacttcttccagattttttttttctcatttctgcgatcctaattctccctatttctctcagGAGTCATTGGCATCTTCGCATGGTTCTCAATGTGGGTTTTGTACTCCCGGTTTTGTCATGTCGATGTATGCCTTGTTGAGGTCAAGTAAAAACTCACCTT
Basic information
| species | Arabidopsis thaliana |
| transcript | AT4G34900.1 |
| intron # | 3 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G34900.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os03g31550.1 (Oryza sativa), 3'ss of exon 3
--------------------------gtggggttttacttcttccagatttt----ttttttctcatttctgcgatcctaattctccctatttctctcagGAGTCATTGGCATCTTCGCATGGTTCTCAATGTGGGTTTTGTACTCCCGGTTTTGTCATGTCGATGTATGCCTTGTTGAGGTCAAGTAAAAACTCACCTT
| ||| | |||| | ||| ||| | || | | || || || || ||||| || || | || ||||| |||||||| ||||| || || |||||||| |||||||||||||| ||| |||| |||||| || | | |||
atgtcatcagtttctgaatcctgtattttcactttcatcctttcctaccaataggatttgctcttgatcatgatgttcagatggtctgctttccttacagGAACGTTTAGCCATGGCCCACGGTTCACAATGTGGATTTTGCACCCCTGGTTTTGTGATGTCGATGTATGCATTGCTGAGATCAAGTGAACAGCCTCCTA
upper sequence: AT4G34900.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA15G03870.1 (Glycine max), 3'ss of exon 3
--------------------------------------------------------------------------------------------------------------------------gtggggttt-tacttcttccagattttttttttctcat---ttctgcgatcctaattctccctatttctctcagGAGTCATTGGCATCTTCGCATGGTTCTCAATGTGGGTTTTGTACTCCCGGTTTTGTCATGTCGATGTATGCCTTGTTGAGGTCAAGTAAAAACTCACCTT
|| | ||| | ||| || | |||| | ||| | ||| | ||| || || | || | |||||| || |||| | |||||||| |||||||| ||||||||||| |||||||| ||||| |||||||| || || |||||||| ||| | |||
gtgacagatgctcagactatcatcttttatcatgcttgtgtacttgttacatgctattgttttgagaatccattacttgtttgcttcccatggtgtaatgtgtttatctccgggccttggctatgagctttcttcttattttaaatttatatttacccatcaatactgtgaattta--cccttgtaatctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCGCCTA
upper sequence: AT4G34900.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA13G41520.1 (Glycine max), 3'ss of exon 4
---------------------------------------------------------------------------------------------------------------------gtggggttt-tacttcttccagattttttttttctcatttctgcgatcctaattctccct---atttctctcagGAGTCATTGGCATCTTCGCATGGTTCTCAATGTGGGTTTTGTACTCCCGGTTTTGTCATGTCGATGTATGCCTTGTTGAGGTCAAGTAAAAACTCACCTT
|| | ||| | ||| || | |||| | ||| | ||| | | | |||| |||| | | |||||| || |||| | |||||||| |||||||| ||||||||||| |||||||| ||||| |||||||| || || |||||||| ||| |||||
gtgacatactgtcttcttttatcatgcatatgtactagtattacttgctattgttttgagtatcctttacttgtttggttctcatggtgtaatgtgtttatctccaagccttgggatatgagctttcttcttattttaaatttatatttacccatcaatac--tttgaatttacccttgtaatctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCACCTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19877239|gb|AU238070.1|AU238070EST: TATCCATTGAAGGAGTTGGTCATCGGAAACTTGGCTTGCACCCTCTTCAG GAGTCATTGGCATCTTCGCATGGTTCTCAATGTGGGTTTTGTACTCCCGGT
genomic: TATCCATTGAAGGAGTTGGTCATCGGAAACTTGGCTTGCACCCTCTTCAGgtggggtttt ... tttctctcagGAGTCATTGGCATCTTCGCATGGTTCTCAATGTGGGTTTTGTACTCCCGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttccagattttttttttctcatttctgcgatcctaattctccctatttctctcagGAGTCATTGGCATCTTCGCATGGTTCTCAATGTGGGTTTTGTACTCCCGGTTTTGTCATGTCGATGTATGCCTTGTTGAGGTCAAGTAAAAACTCACCTT
tcctaat putative branch site (score: 2)
tcctaattctccctat CT-rich tract
attttttttttctcat TA-rich tract
