1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagcattcttctttctgacgtaattaacaaaaaagatgatgaagataatgaaataattaaaaactcatggcctaattaggttgatttaatatcttgatgagaatttctgtatacgcaaatttgtttcctttttcatagaagaaagtgtggtaactgattattgtgtgtggttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACAACTACATCAACTACCACAAGCGTTTGATCGATCTTGTGAAAATTGGAG
species | Arabidopsis thaliana |
transcript | AT4G34050.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|86075556|gb|DR371313.1|DR371313
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|124767213|gb|EH857343.1|EH857343
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAEST: gi|86020813|gb|DR316559.1|DR316559
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGA
EST: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|86020787|gb|DR316533.1|DR316533
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|125012543|gb|EL084812.1|EL084812
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: CCCTGCTCCTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|124923130|gb|EL001353.1|EL001353
genomic: CCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCEST: gi|125093528|gb|EL151079.1|EL151079
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGC
EST: CTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|116475760|gb|EG518352.1|EG518352
genomic: CTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|164181633|gb|ES123865.1|ES123865
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: CTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|125164199|gb|EL190896.1|EL190896
genomic: CTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: TCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|125257471|gb|EL271556.1|EL271556
genomic: TCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: TTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|47832008|gb|CK121692.1|CK121692
genomic: TTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|116475771|gb|EG518363.1|EG518363
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|116446874|gb|EG489466.1|EG489466
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|86085288|gb|DR381047.1|DR381047
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|116431209|gb|EG473801.1|EG473801
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: AGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|124975544|gb|EL049027.1|EL049027
genomic: AGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGEST: gi|116377761|gb|EG420353.1|EG420353
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATG
EST: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|124962165|gb|EL036609.1|EL036609
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTEST: gi|116428558|gb|EG471150.1|EG471150
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTT
EST: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|124797423|gb|EH887102.1|EH887102
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTG-C GAGAAGAACCATGGAACATATGACTTEST: gi|86076802|gb|DR372559.1|DR372559
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTT
EST: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACEST: gi|124843660|gb|EH928097.1|EH928097
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: CCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
genomic: CCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
tcctttttcatagaagaaagtgtggtaactgattattgtgtgtggttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACAACTACATCAACTACCACAAGCGTTTGATCGATCTTGTGAAAATTGGAG
tgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcattcttctttctgacgtaattaacaaaaaagatgatgaagataatgaaataattaaaaactcatggcctaattaggttgatttaatatcttgatgagaatttctgtatacgcaaatttgtttcctttttcatagaagaaagtgtggtaactgattattgtgtgtggttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACAACTACATCAACTACCACAAGCGTTTGATCGATCTTGTGAAAATTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG